Analysis of interatomic Contacts of Structural Units in PDB entry:
8ASP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ASP entry

There are 11 chains in PDB entry 8ASP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	ALA 12	GLY 751
b	THR 3	GLY 731
c	SER 2	TYR 81
d	GLU 3	VAL 141
e	ALA 2	GLN 70
f	ASP 24	ARG 165
i	MET 1	GLY 40
j	MET 1	PRO 40
k	ALA 9	VAL 85
l	ASN 5	VAL 147
m	MET 1	LYS 31

There are101 helices in PDB entry 8ASP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	a	25	30	Right-handed 310
Helix 2	AA2	a	45	52	Right-handed alpha
Helix 3	AA3	a	57	62	Right-handed alpha
Helix 4	AA4	a	64	97	Right-handed alpha
Helix 5	AA5	a	99	106	Right-handed alpha
Helix 6	AA6	a	122	127	Right-handed 310
Helix 7	AA7	a	142	151	Right-handed alpha
Helix 8	AA8	a	154	182	Right-handed alpha
Helix 9	AA9	a	186	191	Right-handed alpha
Helix 10	AB1	a	192	203	Right-handed alpha
Helix 11	AB2	a	204	219	Right-handed alpha
Helix 12	AB3	a	219	230	Right-handed alpha
Helix 13	AB4	a	238	245	Right-handed alpha
Helix 14	AB5	a	245	253	Right-handed alpha
Helix 15	AB6	a	254	259	Right-handed 310
Helix 16	AB7	a	260	265	Right-handed alpha
Helix 17	AB8	a	267	273	Right-handed 310
Helix 18	AB9	a	289	308	Right-handed alpha
Helix 19	AC1	a	320	328	Right-handed alpha
Helix 20	AC2	a	339	344	Right-handed alpha
Helix 21	AC3	a	347	371	Right-handed alpha
Helix 22	AC4	a	382	415	Right-handed alpha
Helix 23	AC5	a	417	421	Right-handed 310
Helix 24	AC6	a	424	432	Right-handed alpha
Helix 25	AC7	a	432	464	Right-handed alpha
Helix 26	AC8	a	466	470	Right-handed 310
Helix 27	AC9	a	480	497	Right-handed alpha
Helix 28	AD1	a	528	555	Right-handed alpha
Helix 29	AD2	a	564	569	Right-handed alpha
Helix 30	AD3	a	586	617	Right-handed alpha
Helix 31	AD4	a	634	639	Right-handed alpha
Helix 32	AD5	a	641	649	Right-handed alpha
Helix 33	AD6	a	649	654	Right-handed alpha
Helix 34	AD7	a	654	659	Right-handed alpha
Helix 35	AD8	a	665	687	Right-handed alpha
Helix 36	AD9	a	689	707	Right-handed alpha
Helix 37	AE1	a	719	749	Right-handed alpha
Helix 38	AE2	b	9	14	Right-handed alpha
Helix 39	AE3	b	18	27	Right-handed alpha
Helix 40	AE4	b	38	72	Right-handed alpha
Helix 41	AE5	b	73	78	Right-handed alpha
Helix 42	AE6	b	97	105	Right-handed alpha
Helix 43	AE7	b	119	127	Right-handed alpha
Helix 44	AE8	b	131	157	Right-handed alpha
Helix 45	AE9	b	158	162	Right-handed 310
Helix 46	AF1	b	164	169	Right-handed alpha
Helix 47	AF2	b	170	181	Right-handed alpha
Helix 48	AF3	b	183	197	Right-handed alpha
Helix 49	AF4	b	197	203	Right-handed alpha
Helix 50	AF5	b	222	228	Right-handed alpha
Helix 51	AF6	b	229	235	Right-handed 310
Helix 52	AF7	b	269	288	Right-handed alpha
Helix 53	AF8	b	300	308	Right-handed alpha
Helix 54	AF9	b	319	327	Right-handed alpha
Helix 55	AG1	b	327	353	Right-handed alpha
Helix 56	AG2	b	362	395	Right-handed alpha
Helix 57	AG3	b	404	412	Right-handed alpha
Helix 58	AG4	b	412	444	Right-handed alpha
Helix 59	AG5	b	446	450	Right-handed 310
Helix 60	AG6	b	455	466	Right-handed alpha
Helix 61	AG7	b	481	485	Right-handed 310
Helix 62	AG8	b	490	499	Right-handed alpha
Helix 63	AG9	b	510	538	Right-handed alpha
Helix 64	AH1	b	546	551	Right-handed 310
Helix 65	AH2	b	559	563	Right-handed 310
Helix 66	AH3	b	568	601	Right-handed alpha
Helix 67	AH4	b	602	610	Right-handed alpha
Helix 68	AH5	b	612	620	Right-handed alpha
Helix 69	AH6	b	620	625	Right-handed alpha
Helix 70	AH7	b	640	662	Right-handed alpha
Helix 71	AH8	b	664	681	Right-handed alpha
Helix 72	AH9	b	698	730	Right-handed alpha
Helix 73	AI1	c	15	21	Right-handed alpha
Helix 74	AI2	c	44	48	Right-handed 310
Helix 75	AI3	c	52	58	Right-handed alpha
Helix 76	AI4	c	73	78	Right-handed alpha
Helix 77	AI5	d	19	25	Right-handed alpha
Helix 78	AI6	d	61	75	Right-handed alpha
Helix 79	AI7	d	121	125	Right-handed 310
Helix 80	AI8	d	127	131	Right-handed 310
Helix 81	AI9	e	62	64	Right-handed 310
Helix 82	AJ1	f	35	43	Right-handed alpha
Helix 83	AJ2	f	53	63	Right-handed alpha
Helix 84	AJ3	f	87	113	Right-handed alpha
Helix 85	AJ4	f	119	124	Right-handed alpha
Helix 86	AJ5	f	126	136	Right-handed alpha
Helix 87	AJ6	f	139	151	Right-handed alpha
Helix 88	AJ7	f	156	160	Right-handed 310
Helix 89	AJ8	i	9	20	Right-handed alpha
Helix 90	AJ9	i	20	36	Right-handed alpha
Helix 91	AK1	j	2	9	Right-handed alpha
Helix 92	AK2	j	10	33	Right-handed alpha
Helix 93	AK3	k	17	37	Right-handed alpha
Helix 94	AK4	k	58	83	Right-handed alpha
Helix 95	AK5	l	12	14	Right-handed 310
Helix 96	AK6	l	27	36	Right-handed alpha
Helix 97	AK7	l	45	60	Right-handed alpha
Helix 98	AK8	l	61	63	Right-handed 310
Helix 99	AK9	l	76	104	Right-handed alpha
Helix 100	AL1	l	116	143	Right-handed alpha
Helix 101	AL2	m	4	31	Right-handed alpha

There are 12 sheets in PDB entry 8ASP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	16	18	first strand
Strand 2	a	183	185	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	113	115	first strand
Strand 2	a	137	138	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	514	516	first strand
Strand 2	a	519	522	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	619	621	first strand
Strand 2	a	627	629	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	87	90	first strand
Strand 2	b	113	115	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	4	7	first strand
Strand 2	c	65	68	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	27	30	first strand
Strand 2	c	38	41	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	53	59	first strand
Strand 2	d	27	34	anti-parallel
Strand 3	d	84	88	anti-parallel
Strand 4	d	94	98	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	38	41	first strand
Strand 2	d	47	50	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	58	61	first strand
Strand 2	e	37	40	anti-parallel
Strand 3	e	22	28	anti-parallel
Strand 4	e	8	11	anti-parallel
Strand 5	e	66	68	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	30	31	first strand
Strand 2	f	66	67	anti-parallel
Strand 3	f	73	74	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	9	10	first strand
Strand 2	l	20	21	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ASP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ASP