Analysis of interatomic Contacts of Structural Units in PDB entry:
8AT6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AT6 entry

There are 6 chains in PDB entry 8AT6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 66	TRP 416
B	HIS 6	LEU 232
C	MET 1	ARG 273
D	MET 66	PRO 419
E	HIS 6	SER 233
F	SER 3	ARG 273

There are 50 helices in PDB entry 8AT6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	90	98	Right-handed alpha
Helix 2	AA2	A	118	136	Right-handed alpha
Helix 3	AA3	A	157	164	Right-handed 310
Helix 4	AA4	A	264	279	Right-handed alpha
Helix 5	AA5	A	298	302	Right-handed 310
Helix 6	AA6	A	303	321	Right-handed alpha
Helix 7	AA7	A	337	348	Right-handed alpha
Helix 8	AA8	A	358	369	Right-handed alpha
Helix 9	AA9	B	7	17	Right-handed alpha
Helix 10	AB1	B	35	49	Right-handed alpha
Helix 11	AB2	B	79	90	Right-handed alpha
Helix 12	AB3	B	113	115	Right-handed 310
Helix 13	AB4	B	116	122	Right-handed alpha
Helix 14	AB5	B	156	165	Right-handed alpha
Helix 15	AB6	B	180	190	Right-handed alpha
Helix 16	AB7	C	19	23	Right-handed 310
Helix 17	AB8	C	42	55	Right-handed alpha
Helix 18	AB9	C	85	95	Right-handed alpha
Helix 19	AC1	C	111	117	Right-handed alpha
Helix 20	AC2	C	121	140	Right-handed alpha
Helix 21	AC3	C	153	158	Right-handed alpha
Helix 22	AC4	C	162	170	Right-handed alpha
Helix 23	AC5	C	170	177	Right-handed alpha
Helix 24	AC6	C	188	192	Right-handed 310
Helix 25	AC7	C	196	201	Right-handed alpha
Helix 26	AC8	C	201	215	Right-handed alpha
Helix 27	AC9	D	90	97	Right-handed alpha
Helix 28	AD1	D	118	140	Right-handed alpha
Helix 29	AD2	D	157	163	Right-handed 310
Helix 30	AD3	D	264	279	Right-handed alpha
Helix 31	AD4	D	298	302	Right-handed 310
Helix 32	AD5	D	303	321	Right-handed alpha
Helix 33	AD6	D	337	348	Right-handed alpha
Helix 34	AD7	D	358	370	Right-handed alpha
Helix 35	AD8	E	7	17	Right-handed alpha
Helix 36	AD9	E	35	49	Right-handed alpha
Helix 37	AE1	E	79	91	Right-handed alpha
Helix 38	AE2	E	113	115	Right-handed 310
Helix 39	AE3	E	116	125	Right-handed alpha
Helix 40	AE4	E	156	165	Right-handed alpha
Helix 41	AE5	E	180	190	Right-handed alpha
Helix 42	AE6	F	20	25	Right-handed alpha
Helix 43	AE7	F	42	56	Right-handed alpha
Helix 44	AE8	F	86	94	Right-handed alpha
Helix 45	AE9	F	111	117	Right-handed alpha
Helix 46	AF1	F	121	139	Right-handed alpha
Helix 47	AF2	F	153	158	Right-handed alpha
Helix 48	AF3	F	162	170	Right-handed alpha
Helix 49	AF4	F	170	177	Right-handed alpha
Helix 50	AF5	F	202	214	Right-handed alpha

There are 10 sheets in PDB entry 8AT6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	77	first strand
Strand 2	A	84	86	anti-parallel
Strand 3	A	102	103	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	259	first strand
Strand 2	A	149	154	parallel
Strand 3	A	283	291	parallel
Strand 4	A	326	331	parallel
Strand 5	A	107	110	parallel
Strand 6	A	351	356	parallel
Strand 7	A	379	385	anti-parallel
Strand 8	A	398	406	anti-parallel
Strand 9	A	411	415	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	74	first strand
Strand 2	B	55	59	parallel
Strand 3	B	103	106	parallel
Strand 4	B	131	136	parallel
Strand 5	B	24	29	parallel
Strand 6	B	167	173	parallel
Strand 7	B	201	210	anti-parallel
Strand 8	B	213	223	anti-parallel
Strand 9	B	228	231	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	107	first strand
Strand 2	C	76	81	parallel
Strand 3	C	144	149	parallel
Strand 4	C	180	186	parallel
Strand 5	C	30	36	parallel
Strand 6	C	217	222	parallel
Strand 7	C	234	240	anti-parallel
Strand 8	C	257	261	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	264	first strand
Strand 2	C	267	268	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	77	first strand
Strand 2	D	84	86	anti-parallel
Strand 3	D	102	103	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	259	first strand
Strand 2	D	149	154	parallel
Strand 3	D	283	291	parallel
Strand 4	D	325	332	parallel
Strand 5	D	109	112	parallel
Strand 6	D	351	356	parallel
Strand 7	D	379	385	anti-parallel
Strand 8	D	402	406	anti-parallel
Strand 9	D	411	415	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	167	first strand
Strand 2	D	241	246	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	74	first strand
Strand 2	E	55	59	parallel
Strand 3	E	102	106	parallel
Strand 4	E	129	136	parallel
Strand 5	E	24	29	parallel
Strand 6	E	167	172	parallel
Strand 7	E	201	208	anti-parallel
Strand 8	E	216	223	anti-parallel
Strand 9	E	230	231	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	103	107	first strand
Strand 2	F	76	81	parallel
Strand 3	F	144	149	parallel
Strand 4	F	180	186	parallel
Strand 5	F	30	36	parallel
Strand 6	F	217	222	parallel
Strand 7	F	235	240	anti-parallel
Strand 8	F	257	264	anti-parallel
Strand 9	F	267	271	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AT6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AT6