Analysis of interatomic Contacts of Structural Units in PDB entry:
8ATD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ATD entry

There are 6 chains in PDB entry 8ATD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	THR 6	LEU 436
E	THR 6	LEU 436
F	THR 6	LEU 436
D	THR 6	LEU 436
B	THR 6	LEU 436
A	THR 6	LEU 436

There are 90 helices in PDB entry 8ATD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	10	15	Right-handed alpha
Helix 2	AA2	C	34	46	Right-handed alpha
Helix 3	AA3	C	47	49	Right-handed 310
Helix 4	AA4	C	72	85	Right-handed alpha
Helix 5	AA5	C	99	109	Right-handed alpha
Helix 6	AA6	C	125	131	Right-handed alpha
Helix 7	AA7	C	156	160	Right-handed 310
Helix 8	AA8	C	169	171	Right-handed 310
Helix 9	AA9	C	211	226	Right-handed alpha
Helix 10	AB1	C	241	246	Right-handed alpha
Helix 11	AB2	C	248	255	Right-handed alpha
Helix 12	AB3	C	266	277	Right-handed alpha
Helix 13	AB4	C	285	293	Right-handed alpha
Helix 14	AB5	C	315	327	Right-handed alpha
Helix 15	AB6	C	336	340	Right-handed 310
Helix 16	AB7	C	398	406	Right-handed alpha
Helix 17	AB8	E	10	15	Right-handed alpha
Helix 18	AB9	E	34	46	Right-handed alpha
Helix 19	AC1	E	53	57	Right-handed 310
Helix 20	AC2	E	72	85	Right-handed alpha
Helix 21	AC3	E	97	109	Right-handed alpha
Helix 22	AC4	E	127	135	Right-handed alpha
Helix 23	AC5	E	156	160	Right-handed 310
Helix 24	AC6	E	169	171	Right-handed 310
Helix 25	AC7	E	211	226	Right-handed alpha
Helix 26	AC8	E	241	246	Right-handed alpha
Helix 27	AC9	E	248	255	Right-handed alpha
Helix 28	AD1	E	266	277	Right-handed alpha
Helix 29	AD2	E	285	293	Right-handed alpha
Helix 30	AD3	E	315	327	Right-handed alpha
Helix 31	AD4	E	398	406	Right-handed alpha
Helix 32	AD5	F	10	15	Right-handed alpha
Helix 33	AD6	F	34	46	Right-handed alpha
Helix 34	AD7	F	72	85	Right-handed alpha
Helix 35	AD8	F	97	109	Right-handed alpha
Helix 36	AD9	F	125	135	Right-handed alpha
Helix 37	AE1	F	156	160	Right-handed 310
Helix 38	AE2	F	169	171	Right-handed 310
Helix 39	AE3	F	211	226	Right-handed alpha
Helix 40	AE4	F	241	246	Right-handed alpha
Helix 41	AE5	F	248	255	Right-handed alpha
Helix 42	AE6	F	266	277	Right-handed alpha
Helix 43	AE7	F	285	293	Right-handed alpha
Helix 44	AE8	F	315	327	Right-handed alpha
Helix 45	AE9	F	336	340	Right-handed 310
Helix 46	AF1	F	398	405	Right-handed alpha
Helix 47	AF2	D	10	15	Right-handed alpha
Helix 48	AF3	D	34	42	Right-handed alpha
Helix 49	AF4	D	44	48	Right-handed 310
Helix 50	AF5	D	72	85	Right-handed alpha
Helix 51	AF6	D	97	109	Right-handed alpha
Helix 52	AF7	D	125	135	Right-handed alpha
Helix 53	AF8	D	156	160	Right-handed 310
Helix 54	AF9	D	169	171	Right-handed 310
Helix 55	AG1	D	211	225	Right-handed alpha
Helix 56	AG2	D	241	246	Right-handed alpha
Helix 57	AG3	D	248	255	Right-handed alpha
Helix 58	AG4	D	266	277	Right-handed alpha
Helix 59	AG5	D	285	293	Right-handed alpha
Helix 60	AG6	D	315	327	Right-handed alpha
Helix 61	AG7	D	398	406	Right-handed alpha
Helix 62	AG8	B	10	15	Right-handed alpha
Helix 63	AG9	B	34	45	Right-handed alpha
Helix 64	AH1	B	72	85	Right-handed alpha
Helix 65	AH2	B	97	109	Right-handed alpha
Helix 66	AH3	B	127	135	Right-handed alpha
Helix 67	AH4	B	156	160	Right-handed 310
Helix 68	AH5	B	169	171	Right-handed 310
Helix 69	AH6	B	211	226	Right-handed alpha
Helix 70	AH7	B	241	246	Right-handed alpha
Helix 71	AH8	B	248	255	Right-handed alpha
Helix 72	AH9	B	266	277	Right-handed alpha
Helix 73	AI1	B	285	293	Right-handed alpha
Helix 74	AI2	B	315	327	Right-handed alpha
Helix 75	AI3	B	398	406	Right-handed alpha
Helix 76	AI4	A	10	15	Right-handed alpha
Helix 77	AI5	A	34	50	Right-handed alpha
Helix 78	AI6	A	72	85	Right-handed alpha
Helix 79	AI7	A	97	109	Right-handed alpha
Helix 80	AI8	A	125	135	Right-handed alpha
Helix 81	AI9	A	156	160	Right-handed 310
Helix 82	AJ1	A	169	171	Right-handed 310
Helix 83	AJ2	A	211	226	Right-handed alpha
Helix 84	AJ3	A	241	246	Right-handed alpha
Helix 85	AJ4	A	248	255	Right-handed alpha
Helix 86	AJ5	A	266	277	Right-handed alpha
Helix 87	AJ6	A	285	293	Right-handed alpha
Helix 88	AJ7	A	315	327	Right-handed alpha
Helix 89	AJ8	A	336	340	Right-handed 310
Helix 90	AJ9	A	398	405	Right-handed alpha

There are 31 sheets in PDB entry 8ATD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	33	first strand
Strand 2	C	21	25	anti-parallel
Strand 3	C	258	260	parallel
Strand 4	C	232	234	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	91	first strand
Strand 2	C	64	67	parallel
Strand 3	C	112	116	parallel
Strand 4	C	137	144	parallel
Strand 5	C	149	155	anti-parallel
Strand 6	C	166	167	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	196	first strand
Strand 2	C	206	210	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	284	first strand
Strand 2	C	306	309	parallel
Strand 3	C	330	334	parallel
Strand 4	C	344	345	anti-parallel
Strand 5	C	360	361	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	369	first strand
Strand 2	C	382	387	anti-parallel
Strand 3	C	413	421	anti-parallel
Strand 4	C	427	432	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	33	first strand
Strand 2	E	21	25	anti-parallel
Strand 3	E	258	260	parallel
Strand 4	E	232	234	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	88	91	first strand
Strand 2	E	64	67	parallel
Strand 3	E	112	116	parallel
Strand 4	E	137	144	parallel
Strand 5	E	149	155	anti-parallel
Strand 6	E	166	167	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	191	196	first strand
Strand 2	E	206	210	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	282	283	first strand
Strand 2	E	307	309	parallel
Strand 3	E	330	334	parallel
Strand 4	E	344	345	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	366	369	first strand
Strand 2	E	382	386	anti-parallel
Strand 3	E	413	421	anti-parallel
Strand 4	E	427	432	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	33	first strand
Strand 2	F	21	25	anti-parallel
Strand 3	F	258	260	parallel
Strand 4	F	232	234	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	65	first strand
Strand 2	F	88	89	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	112	114	first strand
Strand 2	F	137	139	parallel
Strand 3	F	153	155	anti-parallel
Strand 4	F	166	167	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	142	143	first strand
Strand 2	F	150	151	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	191	196	first strand
Strand 2	F	206	210	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	282	284	first strand
Strand 2	F	307	309	parallel
Strand 3	F	330	334	parallel
Strand 4	F	344	345	anti-parallel
Strand 5	F	360	361	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	365	369	first strand
Strand 2	F	382	387	anti-parallel
Strand 3	F	413	421	anti-parallel
Strand 4	F	427	432	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	33	first strand
Strand 2	D	21	25	anti-parallel
Strand 3	D	258	260	parallel
Strand 4	D	232	234	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	91	first strand
Strand 2	D	64	67	parallel
Strand 3	D	113	116	parallel
Strand 4	D	138	144	parallel
Strand 5	D	149	155	anti-parallel
Strand 6	D	166	167	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	196	first strand
Strand 2	D	206	210	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	284	first strand
Strand 2	D	306	309	parallel
Strand 3	D	330	334	parallel
Strand 4	D	344	345	anti-parallel
Strand 5	D	360	361	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	365	369	first strand
Strand 2	D	382	387	anti-parallel
Strand 3	D	413	421	anti-parallel
Strand 4	D	427	432	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	21	25	anti-parallel
Strand 3	B	258	260	parallel
Strand 4	B	232	234	parallel
Strand 5	B	281	282	parallel
Strand 6	B	306	309	parallel
Strand 7	B	330	334	parallel
Strand 8	B	344	345	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	91	first strand
Strand 2	B	64	67	parallel
Strand 3	B	112	116	parallel
Strand 4	B	137	144	parallel
Strand 5	B	149	155	anti-parallel
Strand 6	B	166	167	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	196	first strand
Strand 2	B	206	210	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	369	first strand
Strand 2	B	382	387	anti-parallel
Strand 3	B	413	421	anti-parallel
Strand 4	B	427	432	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	33	first strand
Strand 2	A	21	25	anti-parallel
Strand 3	A	258	260	parallel
Strand 4	A	232	234	parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	92	first strand
Strand 2	A	64	68	parallel
Strand 3	A	112	116	parallel
Strand 4	A	137	143	parallel
Strand 5	A	150	155	anti-parallel
Strand 6	A	166	167	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	196	first strand
Strand 2	A	206	210	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	284	first strand
Strand 2	A	306	309	parallel
Strand 3	A	330	334	parallel
Strand 4	A	344	345	anti-parallel
Strand 5	A	360	361	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	369	first strand
Strand 2	A	382	387	anti-parallel
Strand 3	A	413	421	anti-parallel
Strand 4	A	427	432	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ATD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ATD