Analysis of interatomic Contacts of Structural Units in PDB entry:
8ATF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ATF entry

There are 12 chains in PDB entry 8ATF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	GLU 961	THR 1702
H	ALA 389	THR 419
K	T -72	C 70
L	G -70	A 72
M	ARG 40	ARG 134
N	ASP 24	GLY 101
O	ALA 12	LYS 118
P	SER 32	SER 124
Q	PRO 38	ARG 134
R	ASP 24	GLY 101
S	ALA 12	LYS 118
T	LYS 34	SER 124

There are 59 helices in PDB entry 8ATF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	973	990	Right-handed alpha
Helix 2	AA2	G	1002	1018	Right-handed alpha
Helix 3	AA3	G	1029	1031	Right-handed 310
Helix 4	AA4	G	1032	1044	Right-handed alpha
Helix 5	AA5	G	1055	1064	Right-handed alpha
Helix 6	AA6	G	1086	1092	Right-handed alpha
Helix 7	AA7	G	1092	1097	Right-handed alpha
Helix 8	AA8	G	1108	1113	Right-handed 310
Helix 9	AA9	G	1117	1124	Right-handed alpha
Helix 10	AB1	G	1142	1154	Right-handed alpha
Helix 11	AB2	G	1160	1166	Right-handed alpha
Helix 12	AB3	G	1184	1194	Right-handed alpha
Helix 13	AB4	G	1202	1206	Right-handed 310
Helix 14	AB5	G	1223	1236	Right-handed alpha
Helix 15	AB6	G	1260	1270	Right-handed alpha
Helix 16	AB7	G	1271	1274	Right-handed 310
Helix 17	AB8	G	1544	1551	Right-handed alpha
Helix 18	AB9	G	1552	1569	Right-handed alpha
Helix 19	AC1	G	1578	1592	Right-handed alpha
Helix 20	AC2	G	1604	1618	Right-handed alpha
Helix 21	AC3	G	1628	1632	Right-handed alpha
Helix 22	AC4	G	1651	1660	Right-handed alpha
Helix 23	AC5	G	1681	1702	Right-handed alpha
Helix 24	AC6	H	390	416	Right-handed alpha
Helix 25	AC7	M	44	55	Right-handed alpha
Helix 26	AC8	M	63	76	Right-handed alpha
Helix 27	AC9	M	85	114	Right-handed alpha
Helix 28	AD1	M	120	132	Right-handed alpha
Helix 29	AD2	N	25	29	Right-handed 310
Helix 30	AD3	N	30	41	Right-handed alpha
Helix 31	AD4	N	49	76	Right-handed alpha
Helix 32	AD5	N	82	92	Right-handed alpha
Helix 33	AD6	O	16	21	Right-handed alpha
Helix 34	AD7	O	26	37	Right-handed alpha
Helix 35	AD8	O	45	72	Right-handed alpha
Helix 36	AD9	O	79	90	Right-handed alpha
Helix 37	AE1	O	90	97	Right-handed alpha
Helix 38	AE2	O	112	116	Right-handed 310
Helix 39	AE3	P	37	49	Right-handed alpha
Helix 40	AE4	P	55	84	Right-handed alpha
Helix 41	AE5	P	90	102	Right-handed alpha
Helix 42	AE6	P	103	124	Right-handed alpha
Helix 43	AE7	Q	44	55	Right-handed alpha
Helix 44	AE8	Q	63	76	Right-handed alpha
Helix 45	AE9	Q	85	114	Right-handed alpha
Helix 46	AF1	Q	120	131	Right-handed alpha
Helix 47	AF2	R	25	29	Right-handed 310
Helix 48	AF3	R	30	41	Right-handed alpha
Helix 49	AF4	R	49	76	Right-handed alpha
Helix 50	AF5	R	82	91	Right-handed alpha
Helix 51	AF6	S	16	21	Right-handed alpha
Helix 52	AF7	S	26	37	Right-handed alpha
Helix 53	AF8	S	45	73	Right-handed alpha
Helix 54	AF9	S	79	90	Right-handed alpha
Helix 55	AG1	S	90	97	Right-handed alpha
Helix 56	AG2	T	37	49	Right-handed alpha
Helix 57	AG3	T	55	84	Right-handed alpha
Helix 58	AG4	T	91	102	Right-handed alpha
Helix 59	AG5	T	104	124	Right-handed alpha

There are 12 sheets in PDB entry 8ATF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1049	1052	first strand
Strand 2	G	1081	1085	parallel
Strand 3	G	1024	1028	parallel
Strand 4	G	1101	1106	parallel
Strand 5	G	1128	1134	parallel
Strand 6	G	993	995	parallel
Strand 7	G	1198	1199	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1214	1220	first strand
Strand 2	G	1672	1678	parallel
Strand 3	G	1642	1645	parallel
Strand 4	G	1572	1576	parallel
Strand 5	G	1623	1627	parallel
Strand 6	G	1596	1599	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	83	84	first strand
Strand 2	N	80	81	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	118	119	first strand
Strand 2	N	45	46	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	97	98	first strand
Strand 2	S	101	102	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	42	43	first strand
Strand 2	P	88	89	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	77	78	first strand
Strand 2	P	53	54	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	100	102	first strand
Strand 2	R	96	98	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	83	84	first strand
Strand 2	R	80	81	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	118	119	first strand
Strand 2	R	45	46	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	42	43	first strand
Strand 2	T	88	89	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	77	78	first strand
Strand 2	T	53	54	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ATF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ATF