Analysis of interatomic Contacts of Structural Units in PDB entry:
8AUA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AUA entry

There are 2 chains in PDB entry 8AUA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 10LEU 384
B
 ASN 10LEU 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8AUA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 14Right-handed 310
Helix 2
AA2
A
37 41Right-handed 310
Helix 3
AA3
A
43 54Right-handed alpha
Helix 4
AA4
A
82 99Right-handed alpha
Helix 5
AA5
A
115 123Right-handed 310
Helix 6
AA6
A
156 177Right-handed alpha
Helix 7
AA7
A
190 197Right-handed alpha
Helix 8
AA8
A
210 215Right-handed alpha
Helix 9
AA9
A
215 230Right-handed alpha
Helix 10
AB1
A
251 271Right-handed alpha
Helix 11
AB2
A
298 312Right-handed alpha
Helix 12
AB3
A
323 333Right-handed alpha
Helix 13
AB4
A
342 348Right-handed alpha
Helix 14
AB5
A
350 358Right-handed alpha
Helix 15
AB6
A
365 369Right-handed 310
Helix 16
AB7
B
10 14Right-handed 310
Helix 17
AB8
B
37 41Right-handed 310
Helix 18
AB9
B
43 54Right-handed alpha
Helix 19
AC1
B
82 99Right-handed alpha
Helix 20
AC2
B
115 123Right-handed 310
Helix 21
AC3
B
156 177Right-handed alpha
Helix 22
AC4
B
190 197Right-handed alpha
Helix 23
AC5
B
210 215Right-handed alpha
Helix 24
AC6
B
215 230Right-handed alpha
Helix 25
AC7
B
251 271Right-handed alpha
Helix 26
AC8
B
298 312Right-handed alpha
Helix 27
AC9
B
323 333Right-handed alpha
Helix 28
AD1
B
342 348Right-handed alpha
Helix 29
AD2
B
350 358Right-handed alpha
Helix 30
AD3
B
365 369Right-handed 310
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There are 8 sheets in PDB entry 8AUA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
21 23anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
59 66parallel
Strand 3
A
102 108parallel
Strand 4
A
181 186parallel
Strand 5
A
234 238parallel
Strand 6
A
276 280parallel
Strand 7
A
316 319parallel
Strand 8
A
338 341parallel
Strand 9
A
27 29parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
153 154parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
146 148anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
21 23anti-parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 66first strand
Strand 2
B
102 108parallel
Strand 3
B
181 185parallel
Strand 4
B
234 238parallel
Strand 5
B
276 280parallel
Strand 6
B
316 319parallel
Strand 7
B
338 341parallel
Strand 8
B
27 29parallel
Strand 9
B
59 61parallel
Strand 10
B
102 108parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 127first strand
Strand 2
B
153 154parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 140first strand
Strand 2
B
146 148anti-parallel
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