Analysis of interatomic Contacts of Structural Units in PDB entry:
8AUD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AUD entry

There are 2 chains in PDB entry 8AUD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 46ILE 600
B
 LEU 46ILE 600
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 8AUD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 114Right-handed alpha
Helix 2
AA2
A
146 238Right-handed alpha
Helix 3
AA3
A
345 361Right-handed alpha
Helix 4
AA4
A
373 386Right-handed alpha
Helix 5
AA5
A
461 475Right-handed alpha
Helix 6
AA6
A
512 523Right-handed alpha
Helix 7
AA7
A
531 536Right-handed alpha
Helix 8
AA8
A
543 547Right-handed 310
Helix 9
AA9
A
556 560Right-handed 310
Helix 10
AB1
B
47 114Right-handed alpha
Helix 11
AB2
B
146 238Right-handed alpha
Helix 12
AB3
B
351 365Right-handed alpha
Helix 13
AB4
B
374 386Right-handed alpha
Helix 14
AB5
B
461 475Right-handed alpha
Helix 15
AB6
B
512 523Right-handed alpha
Helix 16
AB7
B
531 536Right-handed alpha
Helix 17
AB8
B
543 547Right-handed 310
Helix 18
AB9
B
556 560Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 8AUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 542first strand
Strand 2
A
596 598anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
552 555first strand
Strand 2
A
562 568anti-parallel
Strand 3
A
571 574anti-parallel
Strand 4
A
583 586anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
540 542first strand
Strand 2
B
596 598anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
552 555first strand
Strand 2
B
562 568anti-parallel
Strand 3
B
571 574anti-parallel
Strand 4
B
583 586anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il