Analysis of interatomic Contacts of Structural Units in PDB entry:
8AUR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AUR entry

There are 3 chains in PDB entry 8AUR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 28LYS 260
B
 ALA 28LYS 260
C
 ALA 28LYS 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8AUR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
101 107Right-handed alpha
Helix 2
AA2
A
134 143Right-handed alpha
Helix 3
AA3
A
146 156Right-handed alpha
Helix 4
AA4
A
157 162Right-handed 310
Helix 5
AA5
A
212 217Right-handed 310
Helix 6
AA6
A
250 254Right-handed 310
Helix 7
AA7
B
101 107Right-handed alpha
Helix 8
AA8
B
134 143Right-handed alpha
Helix 9
AA9
B
146 156Right-handed alpha
Helix 10
AB1
B
157 162Right-handed 310
Helix 11
AB2
B
212 217Right-handed 310
Helix 12
AB3
B
250 254Right-handed 310
Helix 13
AB4
C
101 107Right-handed alpha
Helix 14
AB5
C
134 143Right-handed alpha
Helix 15
AB6
C
146 156Right-handed alpha
Helix 16
AB7
C
157 162Right-handed 310
Helix 17
AB8
C
212 217Right-handed 310
Helix 18
AB9
C
250 254Right-handed 310
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There are 6 sheets in PDB entry 8AUR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 60first strand
Strand 2
A
30 41parallel
Strand 3
B
221 232anti-parallel
Strand 4
B
80 90anti-parallel
Strand 5
B
168 169anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
C
30 41parallel
Strand 3
A
221 232anti-parallel
Strand 4
A
80 90anti-parallel
Strand 5
A
168 169anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 73first strand
Strand 2
A
191 200anti-parallel
Strand 3
A
109 115anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 73first strand
Strand 2
B
191 200anti-parallel
Strand 3
B
109 115anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 73first strand
Strand 2
C
191 200anti-parallel
Strand 3
C
109 115anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
168 169first strand
Strand 2
C
80 90anti-parallel
Strand 3
C
223 232anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il