Analysis of interatomic Contacts of Structural Units in PDB entry:
8AV2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AV2 entry

There are 6 chains in PDB entry 8AV2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 636	SER 750
A	VAL 752	THR 827
B	GLY 632	SER 750
B	VAL 752	THR 827
C	GLN 4	SER 132
D	VAL 5	SER 132

There are 9 helices in PDB entry 8AV2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	666	671	Right-handed alpha
Helix 2	AA2	A	731	736	Right-handed 310
Helix 3	AA3	B	666	671	Right-handed alpha
Helix 4	AA4	B	731	736	Right-handed 310
Helix 5	AA5	C	65	68	Right-handed 310
Helix 6	AA6	C	90	94	Right-handed 310
Helix 7	AA7	C	115	119	Right-handed 310
Helix 8	AA8	D	90	94	Right-handed 310
Helix 9	AA9	D	115	119	Right-handed 310

There are 17 sheets in PDB entry 8AV2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	643	648	first strand
Strand 2	A	656	662	anti-parallel
Strand 3	A	698	703	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	687	694	first strand
Strand 2	A	676	683	anti-parallel
Strand 3	A	708	716	anti-parallel
Strand 4	A	719	720	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	687	694	first strand
Strand 2	A	676	683	anti-parallel
Strand 3	A	708	716	anti-parallel
Strand 4	A	726	729	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	739	748	first strand
Strand 2	A	751	758	anti-parallel
Strand 3	A	792	796	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	782	787	first strand
Strand 2	A	765	774	anti-parallel
Strand 3	A	805	813	anti-parallel
Strand 4	A	816	817	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	782	787	first strand
Strand 2	A	765	774	anti-parallel
Strand 3	A	805	813	anti-parallel
Strand 4	A	821	825	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	643	648	first strand
Strand 2	B	656	662	anti-parallel
Strand 3	B	698	703	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	688	692	first strand
Strand 2	B	676	683	anti-parallel
Strand 3	B	708	715	anti-parallel
Strand 4	B	726	729	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	739	748	first strand
Strand 2	B	751	758	anti-parallel
Strand 3	B	792	796	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	782	787	first strand
Strand 2	B	765	774	anti-parallel
Strand 3	B	805	813	anti-parallel
Strand 4	B	816	817	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	782	787	first strand
Strand 2	B	765	774	anti-parallel
Strand 3	B	805	813	anti-parallel
Strand 4	B	821	824	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	10	first strand
Strand 2	C	21	28	anti-parallel
Strand 3	C	81	86	anti-parallel
Strand 4	C	71	76	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	126	130	parallel
Strand 3	C	95	103	anti-parallel
Strand 4	C	35	42	anti-parallel
Strand 5	C	49	54	anti-parallel
Strand 6	C	61	63	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	126	130	parallel
Strand 3	C	95	103	anti-parallel
Strand 4	C	121	122	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	10	first strand
Strand 2	D	21	28	anti-parallel
Strand 3	D	81	86	anti-parallel
Strand 4	D	71	76	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	126	130	parallel
Strand 3	D	95	103	anti-parallel
Strand 4	D	35	42	anti-parallel
Strand 5	D	48	54	anti-parallel
Strand 6	D	61	63	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	126	130	parallel
Strand 3	D	95	103	anti-parallel
Strand 4	D	121	122	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AV2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AV2