Analysis of interatomic Contacts of Structural Units in PDB entry:
8AVF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AVF entry

There are 6 chains in PDB entry 8AVF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 22	CYS 167
B	LYS 236	ASP 831
C	VAL 22	CYS 167
D	LYS 236	ASP 831
E	VAL 22	CYS 167
F	LYS 236	ASP 831

There are 30 helices in PDB entry 8AVF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	45	Right-handed alpha
Helix 2	AA2	A	45	50	Right-handed alpha
Helix 3	AA3	A	71	89	Right-handed alpha
Helix 4	AA4	A	91	115	Right-handed alpha
Helix 5	AA5	A	130	138	Right-handed alpha
Helix 6	AA6	A	138	161	Right-handed alpha
Helix 7	AA7	B	377	379	Right-handed 310
Helix 8	AA8	B	530	535	Right-handed 310
Helix 9	AA9	B	668	673	Right-handed alpha
Helix 10	AB1	B	734	738	Right-handed 310
Helix 11	AB2	C	23	45	Right-handed alpha
Helix 12	AB3	C	45	50	Right-handed alpha
Helix 13	AB4	C	71	89	Right-handed alpha
Helix 14	AB5	C	91	115	Right-handed alpha
Helix 15	AB6	C	130	138	Right-handed alpha
Helix 16	AB7	C	138	161	Right-handed alpha
Helix 17	AB8	D	377	379	Right-handed 310
Helix 18	AB9	D	530	535	Right-handed 310
Helix 19	AC1	D	668	673	Right-handed alpha
Helix 20	AC2	D	734	738	Right-handed 310
Helix 21	AC3	E	23	45	Right-handed alpha
Helix 22	AC4	E	45	50	Right-handed alpha
Helix 23	AC5	E	71	89	Right-handed alpha
Helix 24	AC6	E	91	115	Right-handed alpha
Helix 25	AC7	E	130	138	Right-handed alpha
Helix 26	AC8	E	138	161	Right-handed alpha
Helix 27	AC9	F	377	379	Right-handed 310
Helix 28	AD1	F	530	535	Right-handed 310
Helix 29	AD2	F	668	673	Right-handed alpha
Helix 30	AD3	F	734	738	Right-handed 310

There are 42 sheets in PDB entry 8AVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	247	first strand
Strand 2	B	253	258	anti-parallel
Strand 3	B	292	295	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	288	first strand
Strand 2	B	267	277	anti-parallel
Strand 3	B	302	312	anti-parallel
Strand 4	B	326	329	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	336	first strand
Strand 2	B	348	353	anti-parallel
Strand 3	B	389	393	anti-parallel
Strand 4	B	381	382	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	343	first strand
Strand 2	B	423	428	parallel
Strand 3	B	408	414	anti-parallel
Strand 4	B	366	370	anti-parallel
Strand 5	B	374	375	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	438	first strand
Strand 2	B	445	450	anti-parallel
Strand 3	B	495	500	anti-parallel
Strand 4	B	488	490	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	485	first strand
Strand 2	B	462	468	anti-parallel
Strand 3	B	509	517	anti-parallel
Strand 4	B	520	523	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	485	first strand
Strand 2	B	462	468	anti-parallel
Strand 3	B	509	517	anti-parallel
Strand 4	B	527	529	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	547	first strand
Strand 2	B	554	559	anti-parallel
Strand 3	B	595	598	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	584	588	first strand
Strand 2	B	568	576	anti-parallel
Strand 3	B	607	615	anti-parallel
Strand 4	B	629	630	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	645	650	first strand
Strand 2	B	658	664	anti-parallel
Strand 3	B	700	705	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	689	696	first strand
Strand 2	B	678	685	anti-parallel
Strand 3	B	709	717	anti-parallel
Strand 4	B	728	732	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	741	750	first strand
Strand 2	B	753	760	anti-parallel
Strand 3	B	794	798	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	784	789	first strand
Strand 2	B	767	776	anti-parallel
Strand 3	B	807	815	anti-parallel
Strand 4	B	818	819	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	784	789	first strand
Strand 2	B	767	776	anti-parallel
Strand 3	B	807	815	anti-parallel
Strand 4	B	823	825	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	247	first strand
Strand 2	D	253	258	anti-parallel
Strand 3	D	292	295	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	281	288	first strand
Strand 2	D	267	277	anti-parallel
Strand 3	D	302	312	anti-parallel
Strand 4	D	326	329	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	334	336	first strand
Strand 2	D	348	353	anti-parallel
Strand 3	D	389	393	anti-parallel
Strand 4	D	381	382	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	343	first strand
Strand 2	D	423	428	parallel
Strand 3	D	408	414	anti-parallel
Strand 4	D	366	370	anti-parallel
Strand 5	D	374	375	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	435	438	first strand
Strand 2	D	445	450	anti-parallel
Strand 3	D	495	500	anti-parallel
Strand 4	D	488	490	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	484	485	first strand
Strand 2	D	462	468	anti-parallel
Strand 3	D	509	517	anti-parallel
Strand 4	D	520	523	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	484	485	first strand
Strand 2	D	462	468	anti-parallel
Strand 3	D	509	517	anti-parallel
Strand 4	D	527	529	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	541	547	first strand
Strand 2	D	554	559	anti-parallel
Strand 3	D	595	598	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	584	588	first strand
Strand 2	D	568	576	anti-parallel
Strand 3	D	607	615	anti-parallel
Strand 4	D	629	630	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	645	650	first strand
Strand 2	D	658	664	anti-parallel
Strand 3	D	700	705	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	689	696	first strand
Strand 2	D	678	685	anti-parallel
Strand 3	D	709	717	anti-parallel
Strand 4	D	728	732	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	741	750	first strand
Strand 2	D	753	760	anti-parallel
Strand 3	D	794	798	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	784	789	first strand
Strand 2	D	767	776	anti-parallel
Strand 3	D	807	815	anti-parallel
Strand 4	D	818	819	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	784	789	first strand
Strand 2	D	767	776	anti-parallel
Strand 3	D	807	815	anti-parallel
Strand 4	D	823	825	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	241	247	first strand
Strand 2	F	253	258	anti-parallel
Strand 3	F	292	295	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	281	288	first strand
Strand 2	F	267	277	anti-parallel
Strand 3	F	302	312	anti-parallel
Strand 4	F	326	329	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	334	336	first strand
Strand 2	F	348	353	anti-parallel
Strand 3	F	389	393	anti-parallel
Strand 4	F	381	382	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	339	343	first strand
Strand 2	F	423	428	parallel
Strand 3	F	408	414	anti-parallel
Strand 4	F	366	370	anti-parallel
Strand 5	F	374	375	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	435	438	first strand
Strand 2	F	445	450	anti-parallel
Strand 3	F	495	500	anti-parallel
Strand 4	F	488	490	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	484	485	first strand
Strand 2	F	462	468	anti-parallel
Strand 3	F	509	517	anti-parallel
Strand 4	F	520	523	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	484	485	first strand
Strand 2	F	462	468	anti-parallel
Strand 3	F	509	517	anti-parallel
Strand 4	F	527	529	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	541	547	first strand
Strand 2	F	554	559	anti-parallel
Strand 3	F	595	598	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	584	588	first strand
Strand 2	F	568	576	anti-parallel
Strand 3	F	607	615	anti-parallel
Strand 4	F	629	630	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	645	650	first strand
Strand 2	F	658	664	anti-parallel
Strand 3	F	700	705	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	689	696	first strand
Strand 2	F	678	685	anti-parallel
Strand 3	F	709	717	anti-parallel
Strand 4	F	728	732	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	741	750	first strand
Strand 2	F	753	760	anti-parallel
Strand 3	F	794	798	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	784	789	first strand
Strand 2	F	767	776	anti-parallel
Strand 3	F	807	815	anti-parallel
Strand 4	F	818	819	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	784	789	first strand
Strand 2	F	767	776	anti-parallel
Strand 3	F	807	815	anti-parallel
Strand 4	F	823	825	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AVF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AVF