Analysis of interatomic Contacts of Structural Units in PDB entry:
8AVG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AVG entry

There are 3 chains in PDB entry 8AVG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 721
B	SER 4	ARG 828
C	SER 85	LEU 546

There are 19 helices in PDB entry 8AVG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	155	159	Right-handed 310
Helix 2	AA2	B	320	324	Right-handed 310
Helix 3	AA3	B	469	481	Right-handed alpha
Helix 4	AA4	B	547	554	Right-handed alpha
Helix 5	AA5	C	99	104	Right-handed 310
Helix 6	AA6	C	131	141	Right-handed alpha
Helix 7	AA7	C	143	159	Right-handed alpha
Helix 8	AA8	C	173	177	Right-handed 310
Helix 9	AA9	C	178	192	Right-handed alpha
Helix 10	AB1	C	200	209	Right-handed alpha
Helix 11	AB2	C	223	227	Right-handed 310
Helix 12	AB3	C	228	239	Right-handed alpha
Helix 13	AB4	C	251	259	Right-handed alpha
Helix 14	AB5	C	264	276	Right-handed alpha
Helix 15	AB6	C	294	307	Right-handed alpha
Helix 16	AB7	C	326	334	Right-handed alpha
Helix 17	AB8	C	341	355	Right-handed alpha
Helix 18	AB9	C	382	395	Right-handed alpha
Helix 19	AC1	C	497	512	Right-handed alpha

There are 37 sheets in PDB entry 8AVG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	374	376	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	368	372	anti-parallel
Strand 3	A	358	363	anti-parallel
Strand 4	A	346	351	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	27	first strand
Strand 2	A	32	37	anti-parallel
Strand 3	A	41	43	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	76	first strand
Strand 2	A	83	87	anti-parallel
Strand 3	A	91	95	anti-parallel
Strand 4	A	106	107	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	117	first strand
Strand 2	A	123	128	anti-parallel
Strand 3	A	132	137	anti-parallel
Strand 4	A	142	147	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	200	first strand
Strand 2	A	206	213	anti-parallel
Strand 3	A	218	225	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	253	254	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	268	first strand
Strand 2	A	274	279	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	294	first strand
Strand 2	A	301	306	anti-parallel
Strand 3	A	319	325	anti-parallel
Strand 4	A	330	337	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	379	first strand
Strand 2	A	390	395	anti-parallel
Strand 3	A	398	403	anti-parallel
Strand 4	A	415	419	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	429	first strand
Strand 2	A	437	441	anti-parallel
Strand 3	A	447	451	anti-parallel
Strand 4	A	481	484	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	510	first strand
Strand 2	A	514	517	anti-parallel
Strand 3	A	532	533	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	519	520	first strand
Strand 2	A	527	528	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	561	first strand
Strand 2	A	572	574	anti-parallel
Strand 3	A	578	579	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	610	616	first strand
Strand 2	A	619	625	anti-parallel
Strand 3	A	631	633	anti-parallel
Strand 4	A	636	639	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	645	648	first strand
Strand 2	A	651	655	anti-parallel
Strand 3	A	660	665	anti-parallel
Strand 4	A	690	691	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	697	701	first strand
Strand 2	A	708	711	anti-parallel
Strand 3	A	717	720	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	12	first strand
Strand 2	B	821	826	anti-parallel
Strand 3	B	812	816	anti-parallel
Strand 4	B	780	785	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	24	first strand
Strand 2	B	32	36	anti-parallel
Strand 3	B	39	43	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	66	first strand
Strand 2	B	77	82	anti-parallel
Strand 3	B	87	91	anti-parallel
Strand 4	B	99	100	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	117	first strand
Strand 2	B	128	133	anti-parallel
Strand 3	B	139	144	anti-parallel
Strand 4	B	149	155	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	169	first strand
Strand 2	B	177	182	anti-parallel
Strand 3	B	186	192	anti-parallel
Strand 4	B	197	204	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	218	first strand
Strand 2	B	221	228	anti-parallel
Strand 3	B	233	238	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	289	first strand
Strand 2	B	307	310	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	296	first strand
Strand 2	B	299	301	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	318	first strand
Strand 2	B	329	333	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	348	first strand
Strand 2	B	354	359	anti-parallel
Strand 3	B	364	368	anti-parallel
Strand 4	B	376	377	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	395	first strand
Strand 2	B	402	406	anti-parallel
Strand 3	B	411	417	anti-parallel
Strand 4	B	429	434	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	443	450	first strand
Strand 2	B	453	458	anti-parallel
Strand 3	B	464	467	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	570	575	first strand
Strand 2	B	582	586	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	596	598	first strand
Strand 2	B	608	610	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	619	622	first strand
Strand 2	B	629	632	anti-parallel
Strand 3	B	638	639	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	672	676	first strand
Strand 2	B	683	688	anti-parallel
Strand 3	B	692	697	anti-parallel
Strand 4	B	713	718	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	723	728	first strand
Strand 2	B	737	744	anti-parallel
Strand 3	B	749	755	anti-parallel

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There are 7 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	91	first strand
Strand 2	C	164	168	parallel
Strand 3	C	214	221	parallel
Strand 4	C	242	248	parallel
Strand 5	C	280	285	parallel
Strand 6	C	314	317	parallel
Strand 7	C	361	364	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	421	425	first strand
Strand 2	C	432	441	anti-parallel
Strand 3	C	428	429	anti-parallel

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There are 7 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	421	425	first strand
Strand 2	C	432	441	anti-parallel
Strand 3	C	446	455	anti-parallel
Strand 4	C	469	477	anti-parallel
Strand 5	C	517	521	parallel
Strand 6	C	541	545	anti-parallel
Strand 7	C	536	538	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AVG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AVG