Analysis of interatomic Contacts of Structural Units in PDB entry:
8AVN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AVN entry

There are 2 chains in PDB entry 8AVN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2GLY 203
B
 LYS 2GLY 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8AVN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 30Right-handed alpha
Helix 2
AA2
A
30 46Right-handed alpha
Helix 3
AA3
A
47 52Right-handed 310
Helix 4
AA4
A
53 60Right-handed alpha
Helix 5
AA5
A
61 64Right-handed 310
Helix 6
AA6
A
65 88Right-handed alpha
Helix 7
AA7
A
98 110Right-handed alpha
Helix 8
AA8
A
111 125Right-handed alpha
Helix 9
AA9
A
152 157Right-handed 310
Helix 10
AB1
A
167 170Right-handed 310
Helix 11
AB2
A
171 176Right-handed alpha
Helix 12
AB3
A
178 187Right-handed alpha
Helix 13
AB4
A
188 190Right-handed 310
Helix 14
AB5
A
191 202Right-handed alpha
Helix 15
AB6
B
20 30Right-handed alpha
Helix 16
AB7
B
30 44Right-handed alpha
Helix 17
AB8
B
48 52Right-handed 310
Helix 18
AB9
B
53 60Right-handed alpha
Helix 19
AC1
B
61 64Right-handed 310
Helix 20
AC2
B
65 88Right-handed alpha
Helix 21
AC3
B
98 110Right-handed alpha
Helix 22
AC4
B
111 125Right-handed alpha
Helix 23
AC5
B
152 157Right-handed 310
Helix 24
AC6
B
167 170Right-handed 310
Helix 25
AC7
B
171 176Right-handed alpha
Helix 26
AC8
B
178 187Right-handed alpha
Helix 27
AC9
B
188 190Right-handed 310
Helix 28
AD1
B
191 202Right-handed alpha
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There are 2 sheets in PDB entry 8AVN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 148first strand
Strand 2
A
130 136anti-parallel
Strand 3
A
159 165anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 148first strand
Strand 2
B
130 136anti-parallel
Strand 3
B
159 165anti-parallel
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