Analysis of interatomic Contacts of Structural Units in PDB entry:
8AVP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AVP entry

There are 20 chains in PDB entry 8AVP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	ALA 122
B	THR 2	ALA 122
C	THR 2	ALA 122
D	THR 2	ALA 122
E	THR 2	ALA 122
F	THR 2	ALA 122
G	THR 2	ALA 122
H	THR 2	ALA 122
I	THR 2	ALA 122
J	THR 2	ALA 122
K	THR 2	ALA 122
L	THR 2	ALA 122
M	THR 2	ALA 122
N	THR 2	ALA 122
O	THR 2	ALA 122
P	THR 2	ALA 122
S	THR 2	ALA 122
T	THR 2	ALA 122
Q	THR 2	ALA 122
R	THR 2	ALA 122

There are 15 helices in PDB entry 8AVP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	8	Right-handed 310
Helix 2	AA2	B	4	8	Right-handed 310
Helix 3	AA3	C	4	8	Right-handed 310
Helix 4	AA4	D	3	8	Right-handed 310
Helix 5	AA5	E	4	8	Right-handed 310
Helix 6	AA6	F	3	8	Right-handed 310
Helix 7	AA7	H	3	8	Right-handed 310
Helix 8	AA8	I	3	8	Right-handed 310
Helix 9	AA9	J	3	8	Right-handed 310
Helix 10	AB1	K	4	8	Right-handed 310
Helix 11	AB2	N	4	8	Right-handed 310
Helix 12	AB3	O	4	8	Right-handed 310
Helix 13	AB4	P	4	8	Right-handed 310
Helix 14	AB5	S	3	8	Right-handed 310
Helix 15	AB6	T	3	7	Right-handed 310

There are 20 sheets in PDB entry 8AVP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	16	first strand
Strand 2	A	21	26	anti-parallel
Strand 3	A	31	37	anti-parallel
Strand 4	A	49	57	anti-parallel
Strand 5	A	60	66	anti-parallel
Strand 6	A	76	87	anti-parallel
Strand 7	A	91	104	anti-parallel
Strand 8	A	107	120	anti-parallel
Strand 9	A	10	16	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	15	first strand
Strand 2	B	21	26	anti-parallel
Strand 3	B	31	37	anti-parallel
Strand 4	B	49	57	anti-parallel
Strand 5	B	60	68	anti-parallel
Strand 6	B	73	86	anti-parallel
Strand 7	B	92	104	anti-parallel
Strand 8	B	107	120	anti-parallel
Strand 9	B	10	15	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	15	first strand
Strand 2	C	21	26	anti-parallel
Strand 3	C	31	37	anti-parallel
Strand 4	C	49	57	anti-parallel
Strand 5	C	60	66	anti-parallel
Strand 6	C	76	86	anti-parallel
Strand 7	C	92	103	anti-parallel
Strand 8	C	108	120	anti-parallel
Strand 9	C	10	15	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	15	first strand
Strand 2	D	21	26	anti-parallel
Strand 3	D	31	37	anti-parallel
Strand 4	D	49	57	anti-parallel
Strand 5	D	60	68	anti-parallel
Strand 6	D	73	87	anti-parallel
Strand 7	D	91	104	anti-parallel
Strand 8	D	107	120	anti-parallel
Strand 9	D	10	15	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	15	first strand
Strand 2	E	21	26	anti-parallel
Strand 3	E	31	37	anti-parallel
Strand 4	E	50	57	anti-parallel
Strand 5	E	60	68	anti-parallel
Strand 6	E	73	87	anti-parallel
Strand 7	E	91	103	anti-parallel
Strand 8	E	108	120	anti-parallel
Strand 9	E	11	15	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	15	first strand
Strand 2	F	21	26	anti-parallel
Strand 3	F	31	37	anti-parallel
Strand 4	F	49	57	anti-parallel
Strand 5	F	60	66	anti-parallel
Strand 6	F	76	86	anti-parallel
Strand 7	F	92	104	anti-parallel
Strand 8	F	107	120	anti-parallel
Strand 9	F	10	15	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	15	first strand
Strand 2	G	21	26	anti-parallel
Strand 3	G	32	37	anti-parallel
Strand 4	G	50	57	anti-parallel
Strand 5	G	60	68	anti-parallel
Strand 6	G	73	86	anti-parallel
Strand 7	G	92	104	anti-parallel
Strand 8	G	107	120	anti-parallel
Strand 9	G	10	15	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	15	first strand
Strand 2	H	21	26	anti-parallel
Strand 3	H	31	37	anti-parallel
Strand 4	H	49	57	anti-parallel
Strand 5	H	60	66	anti-parallel
Strand 6	H	76	87	anti-parallel
Strand 7	H	91	104	anti-parallel
Strand 8	H	107	120	anti-parallel
Strand 9	H	11	15	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	16	first strand
Strand 2	I	21	26	anti-parallel
Strand 3	I	32	37	anti-parallel
Strand 4	I	49	57	anti-parallel
Strand 5	I	60	66	anti-parallel
Strand 6	I	76	86	anti-parallel
Strand 7	I	92	103	anti-parallel
Strand 8	I	108	120	anti-parallel
Strand 9	I	11	16	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	15	first strand
Strand 2	J	21	26	anti-parallel
Strand 3	J	31	37	anti-parallel
Strand 4	J	49	57	anti-parallel
Strand 5	J	60	68	anti-parallel
Strand 6	J	73	86	anti-parallel
Strand 7	J	92	102	anti-parallel
Strand 8	J	109	120	anti-parallel
Strand 9	J	11	15	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	31	32	first strand
Strand 2	K	53	57	anti-parallel
Strand 3	K	60	68	anti-parallel
Strand 4	K	73	87	anti-parallel
Strand 5	K	91	102	anti-parallel
Strand 6	K	109	120	anti-parallel
Strand 7	K	11	16	anti-parallel
Strand 8	K	21	25	anti-parallel
Strand 9	K	34	37	anti-parallel
Strand 10	K	49	51	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	15	first strand
Strand 2	L	21	26	anti-parallel
Strand 3	L	31	37	anti-parallel
Strand 4	L	51	57	anti-parallel
Strand 5	L	60	68	anti-parallel
Strand 6	L	73	86	anti-parallel
Strand 7	L	92	103	anti-parallel
Strand 8	L	108	119	anti-parallel
Strand 9	L	10	15	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	11	15	first strand
Strand 2	M	21	27	anti-parallel
Strand 3	M	31	37	anti-parallel
Strand 4	M	50	57	anti-parallel
Strand 5	M	60	68	anti-parallel
Strand 6	M	73	86	anti-parallel
Strand 7	M	92	103	anti-parallel
Strand 8	M	108	120	anti-parallel
Strand 9	M	11	15	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	15	first strand
Strand 2	N	21	26	anti-parallel
Strand 3	N	31	37	anti-parallel
Strand 4	N	50	57	anti-parallel
Strand 5	N	60	68	anti-parallel
Strand 6	N	73	87	anti-parallel
Strand 7	N	91	104	anti-parallel
Strand 8	N	107	120	anti-parallel
Strand 9	N	10	15	anti-parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	50	51	first strand
Strand 2	O	31	37	anti-parallel
Strand 3	O	53	57	anti-parallel
Strand 4	O	60	68	anti-parallel
Strand 5	O	73	87	anti-parallel
Strand 6	O	91	103	anti-parallel
Strand 7	O	108	119	anti-parallel
Strand 8	O	12	15	anti-parallel
Strand 9	O	21	26	anti-parallel
Strand 10	O	31	37	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	11	15	first strand
Strand 2	P	21	26	anti-parallel
Strand 3	P	31	37	anti-parallel
Strand 4	P	50	57	anti-parallel
Strand 5	P	60	68	anti-parallel
Strand 6	P	73	86	anti-parallel
Strand 7	P	92	102	anti-parallel
Strand 8	P	109	119	anti-parallel
Strand 9	P	11	15	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	11	15	first strand
Strand 2	S	21	26	anti-parallel
Strand 3	S	31	37	anti-parallel
Strand 4	S	49	57	anti-parallel
Strand 5	S	60	66	anti-parallel
Strand 6	S	76	86	anti-parallel
Strand 7	S	92	104	anti-parallel
Strand 8	S	107	120	anti-parallel
Strand 9	S	11	15	anti-parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	10	15	first strand
Strand 2	T	21	26	anti-parallel
Strand 3	T	31	37	anti-parallel
Strand 4	T	49	57	anti-parallel
Strand 5	T	60	68	anti-parallel
Strand 6	T	73	87	anti-parallel
Strand 7	T	91	104	anti-parallel
Strand 8	T	107	119	anti-parallel
Strand 9	T	10	15	anti-parallel

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There are 10 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	65	68	first strand
Strand 2	Q	73	84	anti-parallel
Strand 3	Q	93	102	anti-parallel
Strand 4	Q	109	119	anti-parallel
Strand 5	Q	10	15	anti-parallel
Strand 6	Q	21	26	anti-parallel
Strand 7	Q	31	37	anti-parallel
Strand 8	Q	49	57	anti-parallel
Strand 9	Q	60	62	anti-parallel
Strand 10	Q	73	84	anti-parallel

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There are 12 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	108	111	first strand
Strand 2	R	100	103	anti-parallel
Strand 3	R	76	78	anti-parallel
Strand 4	R	60	66	anti-parallel
Strand 5	R	82	85	anti-parallel
Strand 6	R	93	96	anti-parallel
Strand 7	R	115	119	anti-parallel
Strand 8	R	11	15	anti-parallel
Strand 9	R	21	26	anti-parallel
Strand 10	R	32	37	anti-parallel
Strand 11	R	50	57	anti-parallel
Strand 12	R	60	66	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AVP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AVP