Analysis of interatomic Contacts of Structural Units in PDB entry:
8AVV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AVV entry

There are 2 chains in PDB entry 8AVV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 7	SER 519
B	PRO 7	SER 519

There are 34 helices in PDB entry 8AVV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	63	Right-handed alpha
Helix 2	AA2	A	65	70	Right-handed alpha
Helix 3	AA3	A	73	78	Right-handed alpha
Helix 4	AA4	A	81	89	Right-handed alpha
Helix 5	AA5	A	139	148	Right-handed alpha
Helix 6	AA6	A	155	169	Right-handed alpha
Helix 7	AA7	A	209	216	Right-handed alpha
Helix 8	AA8	A	257	267	Right-handed alpha
Helix 9	AA9	A	298	328	Right-handed alpha
Helix 10	AB1	A	332	342	Right-handed alpha
Helix 11	AB2	A	347	352	Right-handed alpha
Helix 12	AB3	A	384	396	Right-handed alpha
Helix 13	AB4	A	407	412	Right-handed alpha
Helix 14	AB5	A	413	416	Right-handed 310
Helix 15	AB6	A	455	460	Right-handed 310
Helix 16	AB7	A	484	501	Right-handed alpha
Helix 17	AB8	A	501	519	Right-handed alpha
Helix 18	AB9	B	57	63	Right-handed alpha
Helix 19	AC1	B	65	70	Right-handed alpha
Helix 20	AC2	B	73	78	Right-handed alpha
Helix 21	AC3	B	81	89	Right-handed alpha
Helix 22	AC4	B	139	148	Right-handed alpha
Helix 23	AC5	B	155	169	Right-handed alpha
Helix 24	AC6	B	209	216	Right-handed alpha
Helix 25	AC7	B	257	267	Right-handed alpha
Helix 26	AC8	B	298	328	Right-handed alpha
Helix 27	AC9	B	332	342	Right-handed alpha
Helix 28	AD1	B	347	352	Right-handed alpha
Helix 29	AD2	B	384	396	Right-handed alpha
Helix 30	AD3	B	407	412	Right-handed alpha
Helix 31	AD4	B	413	416	Right-handed 310
Helix 32	AD5	B	455	460	Right-handed 310
Helix 33	AD6	B	484	501	Right-handed alpha
Helix 34	AD7	B	501	519	Right-handed alpha

There are 10 sheets in PDB entry 8AVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	A	232	235	anti-parallel
Strand 3	A	51	55	anti-parallel
Strand 4	A	40	45	anti-parallel
Strand 5	A	121	128	anti-parallel
Strand 6	A	111	118	anti-parallel
Strand 7	A	99	103	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	184	191	anti-parallel
Strand 3	A	172	178	anti-parallel
Strand 4	A	282	291	anti-parallel
Strand 5	A	271	279	anti-parallel
Strand 6	A	221	224	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	239	first strand
Strand 2	A	244	245	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	380	first strand
Strand 2	A	367	372	anti-parallel
Strand 3	A	437	442	anti-parallel
Strand 4	A	424	429	anti-parallel
Strand 5	A	402	405	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	452	first strand
Strand 2	A	471	479	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	232	235	anti-parallel
Strand 3	B	51	55	anti-parallel
Strand 4	B	40	45	anti-parallel
Strand 5	B	121	128	anti-parallel
Strand 6	B	111	118	anti-parallel
Strand 7	B	99	103	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	184	191	anti-parallel
Strand 3	B	172	178	anti-parallel
Strand 4	B	282	291	anti-parallel
Strand 5	B	271	279	anti-parallel
Strand 6	B	221	224	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	239	first strand
Strand 2	B	244	245	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	380	first strand
Strand 2	B	367	372	anti-parallel
Strand 3	B	437	442	anti-parallel
Strand 4	B	424	429	anti-parallel
Strand 5	B	402	405	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	452	first strand
Strand 2	B	471	479	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AVV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AVV