Analysis of interatomic Contacts of Structural Units in PDB entry:
8AVW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AVW entry

There are 2 chains in PDB entry 8AVW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 7	LEU 591
B	PRO 7	LEU 591

There are 38 helices in PDB entry 8AVW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	63	Right-handed alpha
Helix 2	AA2	A	65	70	Right-handed alpha
Helix 3	AA3	A	73	78	Right-handed alpha
Helix 4	AA4	A	81	89	Right-handed alpha
Helix 5	AA5	A	139	148	Right-handed alpha
Helix 6	AA6	A	152	169	Right-handed alpha
Helix 7	AA7	A	209	216	Right-handed alpha
Helix 8	AA8	A	257	268	Right-handed alpha
Helix 9	AA9	A	298	331	Right-handed alpha
Helix 10	AB1	A	332	342	Right-handed alpha
Helix 11	AB2	A	348	353	Right-handed alpha
Helix 12	AB3	A	384	396	Right-handed alpha
Helix 13	AB4	A	407	412	Right-handed alpha
Helix 14	AB5	A	413	416	Right-handed 310
Helix 15	AB6	A	455	459	Right-handed 310
Helix 16	AB7	A	484	499	Right-handed alpha
Helix 17	AB8	A	501	543	Right-handed alpha
Helix 18	AB9	A	546	551	Right-handed alpha
Helix 19	AC1	A	563	591	Right-handed alpha
Helix 20	AC2	B	57	63	Right-handed alpha
Helix 21	AC3	B	65	70	Right-handed alpha
Helix 22	AC4	B	73	78	Right-handed alpha
Helix 23	AC5	B	81	89	Right-handed alpha
Helix 24	AC6	B	139	148	Right-handed alpha
Helix 25	AC7	B	152	169	Right-handed alpha
Helix 26	AC8	B	209	216	Right-handed alpha
Helix 27	AC9	B	257	268	Right-handed alpha
Helix 28	AD1	B	298	331	Right-handed alpha
Helix 29	AD2	B	332	342	Right-handed alpha
Helix 30	AD3	B	348	353	Right-handed alpha
Helix 31	AD4	B	384	396	Right-handed alpha
Helix 32	AD5	B	407	412	Right-handed alpha
Helix 33	AD6	B	413	416	Right-handed 310
Helix 34	AD7	B	455	459	Right-handed 310
Helix 35	AD8	B	484	499	Right-handed alpha
Helix 36	AD9	B	501	543	Right-handed alpha
Helix 37	AE1	B	546	551	Right-handed alpha
Helix 38	AE2	B	563	591	Right-handed alpha

There are 8 sheets in PDB entry 8AVW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	A	232	235	anti-parallel
Strand 3	A	51	55	anti-parallel
Strand 4	A	40	45	anti-parallel
Strand 5	A	121	128	anti-parallel
Strand 6	A	111	117	anti-parallel
Strand 7	A	99	103	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	184	191	anti-parallel
Strand 3	A	172	178	anti-parallel
Strand 4	A	282	291	anti-parallel
Strand 5	A	271	279	anti-parallel
Strand 6	A	221	224	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	380	first strand
Strand 2	A	367	372	anti-parallel
Strand 3	A	436	442	anti-parallel
Strand 4	A	424	430	anti-parallel
Strand 5	A	402	405	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	452	first strand
Strand 2	A	471	476	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	232	235	anti-parallel
Strand 3	B	51	55	anti-parallel
Strand 4	B	40	45	anti-parallel
Strand 5	B	121	128	anti-parallel
Strand 6	B	111	117	anti-parallel
Strand 7	B	99	103	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	184	191	anti-parallel
Strand 3	B	172	178	anti-parallel
Strand 4	B	282	291	anti-parallel
Strand 5	B	271	279	anti-parallel
Strand 6	B	221	224	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	380	first strand
Strand 2	B	367	372	anti-parallel
Strand 3	B	436	442	anti-parallel
Strand 4	B	424	430	anti-parallel
Strand 5	B	402	405	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	452	first strand
Strand 2	B	471	479	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AVW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AVW