Analysis of interatomic Contacts of Structural Units in PDB entry:
8AVX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AVX entry

There are 2 chains in PDB entry 8AVX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 22	ALA 521
B	GLU 22	ALA 521

There are 34 helices in PDB entry 8AVX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	63	Right-handed alpha
Helix 2	AA2	A	65	70	Right-handed alpha
Helix 3	AA3	A	73	78	Right-handed alpha
Helix 4	AA4	A	81	89	Right-handed alpha
Helix 5	AA5	A	139	149	Right-handed alpha
Helix 6	AA6	A	152	168	Right-handed alpha
Helix 7	AA7	A	209	219	Right-handed alpha
Helix 8	AA8	A	259	268	Right-handed alpha
Helix 9	AA9	A	298	342	Right-handed alpha
Helix 10	AB1	A	347	352	Right-handed alpha
Helix 11	AB2	A	358	364	Right-handed alpha
Helix 12	AB3	A	384	398	Right-handed alpha
Helix 13	AB4	A	407	412	Right-handed alpha
Helix 14	AB5	A	465	474	Right-handed alpha
Helix 15	AB6	A	484	492	Right-handed alpha
Helix 16	AB7	A	494	499	Right-handed alpha
Helix 17	AB8	A	503	521	Right-handed alpha
Helix 18	AB9	B	57	63	Right-handed alpha
Helix 19	AC1	B	65	70	Right-handed alpha
Helix 20	AC2	B	73	78	Right-handed alpha
Helix 21	AC3	B	81	89	Right-handed alpha
Helix 22	AC4	B	139	149	Right-handed alpha
Helix 23	AC5	B	152	168	Right-handed alpha
Helix 24	AC6	B	209	219	Right-handed alpha
Helix 25	AC7	B	259	268	Right-handed alpha
Helix 26	AC8	B	298	342	Right-handed alpha
Helix 27	AC9	B	347	352	Right-handed alpha
Helix 28	AD1	B	358	364	Right-handed alpha
Helix 29	AD2	B	384	398	Right-handed alpha
Helix 30	AD3	B	407	412	Right-handed alpha
Helix 31	AD4	B	465	474	Right-handed alpha
Helix 32	AD5	B	484	492	Right-handed alpha
Helix 33	AD6	B	494	499	Right-handed alpha
Helix 34	AD7	B	503	521	Right-handed alpha

There are 7 sheets in PDB entry 8AVX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	A	232	235	anti-parallel
Strand 3	A	51	55	anti-parallel
Strand 4	A	40	45	anti-parallel
Strand 5	A	121	128	anti-parallel
Strand 6	A	110	118	anti-parallel
Strand 7	A	99	104	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	183	190	anti-parallel
Strand 3	A	172	179	anti-parallel
Strand 4	A	282	290	anti-parallel
Strand 5	A	272	279	anti-parallel
Strand 6	A	221	224	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	380	first strand
Strand 2	A	367	372	anti-parallel
Strand 3	A	436	442	anti-parallel
Strand 4	A	424	430	anti-parallel
Strand 5	A	402	405	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	446	first strand
Strand 2	A	478	479	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	232	235	anti-parallel
Strand 3	B	51	55	anti-parallel
Strand 4	B	40	45	anti-parallel
Strand 5	B	121	128	anti-parallel
Strand 6	B	109	118	anti-parallel
Strand 7	B	99	105	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	183	190	anti-parallel
Strand 3	B	172	179	anti-parallel
Strand 4	B	282	290	anti-parallel
Strand 5	B	272	279	anti-parallel
Strand 6	B	221	224	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	380	first strand
Strand 2	B	367	372	anti-parallel
Strand 3	B	436	442	anti-parallel
Strand 4	B	424	430	anti-parallel
Strand 5	B	402	405	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AVX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AVX