Analysis of interatomic Contacts of Structural Units in PDB entry:
8AVY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AVY entry

There is 1 chain in PDB entry 8AVY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 34VAL 1269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 8AVY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 62Right-handed alpha
Helix 2
AA2
A
62 73Right-handed alpha
Helix 3
AA3
A
74 85Right-handed alpha
Helix 4
AA4
A
91 154Right-handed alpha
Helix 5
AA5
A
155 162Right-handed alpha
Helix 6
AA6
A
164 180Right-handed alpha
Helix 7
AA7
A
183 207Right-handed alpha
Helix 8
AA8
A
211 256Right-handed alpha
Helix 9
AA9
A
256 263Right-handed alpha
Helix 10
AB1
A
265 319Right-handed alpha
Helix 11
AB2
A
329 334Right-handed alpha
Helix 12
AB3
A
335 367Right-handed alpha
Helix 13
AB4
A
428 437Right-handed alpha
Helix 14
AB5
A
458 465Right-handed alpha
Helix 15
AB6
A
479 486Right-handed alpha
Helix 16
AB7
A
492 503Right-handed alpha
Helix 17
AB8
A
505 511Right-handed alpha
Helix 18
AB9
A
514 518Right-handed 310
Helix 19
AC1
A
521 525Right-handed 310
Helix 20
AC2
A
528 543Right-handed alpha
Helix 21
AC3
A
558 571Right-handed alpha
Helix 22
AC4
A
572 576Right-handed 310
Helix 23
AC5
A
584 590Right-handed alpha
Helix 24
AC6
A
607 615Right-handed alpha
Helix 25
AC7
A
616 623Right-handed alpha
Helix 26
AC8
A
691 698Right-handed alpha
Helix 27
AC9
A
699 702Right-handed 310
Helix 28
AD1
A
703 737Right-handed alpha
Helix 29
AD2
A
741 743Right-handed 310
Helix 30
AD3
A
744 795Right-handed alpha
Helix 31
AD4
A
796 801Right-handed alpha
Helix 32
AD5
A
802 805Right-handed 310
Helix 33
AD6
A
806 823Right-handed alpha
Helix 34
AD7
A
826 850Right-handed alpha
Helix 35
AD8
A
852 899Right-handed alpha
Helix 36
AD9
A
899 906Right-handed alpha
Helix 37
AE1
A
908 920Right-handed alpha
Helix 38
AE2
A
920 962Right-handed alpha
Helix 39
AE3
A
966 989Right-handed alpha
Helix 40
AE4
A
990 1010Right-handed alpha
Helix 41
AE5
A
1071 1080Right-handed alpha
Helix 42
AE6
A
1101 1107Right-handed alpha
Helix 43
AE7
A
1122 1129Right-handed alpha
Helix 44
AE8
A
1137 1148Right-handed alpha
Helix 45
AE9
A
1150 1156Right-handed alpha
Helix 46
AF1
A
1159 1163Right-handed 310
Helix 47
AF2
A
1166 1170Right-handed 310
Helix 48
AF3
A
1173 1187Right-handed alpha
Helix 49
AF4
A
1203 1217Right-handed alpha
Helix 50
AF5
A
1229 1233Right-handed 310
Helix 51
AF6
A
1252 1259Right-handed alpha
Helix 52
AF7
A
1261 1267Right-handed alpha
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There are 4 sheets in PDB entry 8AVY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 413first strand
Strand 2
A
388 395anti-parallel
Strand 3
A
444 449anti-parallel
Strand 4
A
452 453anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 469first strand
Strand 2
A
547 551parallel
Strand 3
A
577 581parallel
Strand 4
A
418 423parallel
Strand 5
A
593 597parallel
Strand 6
A
602 606anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1053 1056first strand
Strand 2
A
1031 1037anti-parallel
Strand 3
A
1087 1092anti-parallel
Strand 4
A
1095 1096anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1109 1112first strand
Strand 2
A
1192 1196parallel
Strand 3
A
1222 1226parallel
Strand 4
A
1061 1065parallel
Strand 5
A
1238 1243parallel
Strand 6
A
1246 1251anti-parallel
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