Analysis of interatomic Contacts of Structural Units in PDB entry:
8AVZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AVZ entry

There are 4 chains in PDB entry 8AVZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2PRO 318
B
 ASN 2ARG 316
C
 ASN 2ARG 316
D
 ASN 2ARG 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 8AVZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 27Right-handed alpha
Helix 2
AA2
A
27 46Right-handed alpha
Helix 3
AA3
A
48 54Right-handed alpha
Helix 4
AA4
A
66 88Right-handed alpha
Helix 5
AA5
A
100 110Right-handed alpha
Helix 6
AA6
A
113 132Right-handed alpha
Helix 7
AA7
A
144 150Right-handed alpha
Helix 8
AA8
A
151 155Right-handed 310
Helix 9
AA9
A
173 186Right-handed alpha
Helix 10
AB1
A
202 207Right-handed 310
Helix 11
AB2
A
208 218Right-handed alpha
Helix 12
AB3
A
243 251Right-handed alpha
Helix 13
AB4
A
254 266Right-handed alpha
Helix 14
AB5
A
274 276Right-handed 310
Helix 15
AB6
A
277 287Right-handed alpha
Helix 16
AB7
A
288 293Right-handed 310
Helix 17
AB8
A
304 314Right-handed alpha
Helix 18
AB9
B
20 27Right-handed alpha
Helix 19
AC1
B
27 46Right-handed alpha
Helix 20
AC2
B
48 54Right-handed alpha
Helix 21
AC3
B
66 88Right-handed alpha
Helix 22
AC4
B
100 109Right-handed alpha
Helix 23
AC5
B
113 132Right-handed alpha
Helix 24
AC6
B
145 150Right-handed alpha
Helix 25
AC7
B
151 155Right-handed 310
Helix 26
AC8
B
173 187Right-handed alpha
Helix 27
AC9
B
202 207Right-handed 310
Helix 28
AD1
B
208 218Right-handed alpha
Helix 29
AD2
B
243 251Right-handed alpha
Helix 30
AD3
B
254 266Right-handed alpha
Helix 31
AD4
B
274 276Right-handed 310
Helix 32
AD5
B
277 287Right-handed alpha
Helix 33
AD6
B
288 293Right-handed 310
Helix 34
AD7
B
304 314Right-handed alpha
Helix 35
AD8
C
20 27Right-handed alpha
Helix 36
AD9
C
27 46Right-handed alpha
Helix 37
AE1
C
48 54Right-handed alpha
Helix 38
AE2
C
66 88Right-handed alpha
Helix 39
AE3
C
100 110Right-handed alpha
Helix 40
AE4
C
113 132Right-handed alpha
Helix 41
AE5
C
145 150Right-handed alpha
Helix 42
AE6
C
151 155Right-handed 310
Helix 43
AE7
C
173 187Right-handed alpha
Helix 44
AE8
C
202 207Right-handed 310
Helix 45
AE9
C
208 218Right-handed alpha
Helix 46
AF1
C
243 251Right-handed alpha
Helix 47
AF2
C
254 266Right-handed alpha
Helix 48
AF3
C
274 276Right-handed 310
Helix 49
AF4
C
277 287Right-handed alpha
Helix 50
AF5
C
288 293Right-handed 310
Helix 51
AF6
C
304 314Right-handed alpha
Helix 52
AF7
D
20 27Right-handed alpha
Helix 53
AF8
D
27 46Right-handed alpha
Helix 54
AF9
D
48 54Right-handed alpha
Helix 55
AG1
D
66 88Right-handed alpha
Helix 56
AG2
D
100 110Right-handed alpha
Helix 57
AG3
D
113 132Right-handed alpha
Helix 58
AG4
D
144 150Right-handed alpha
Helix 59
AG5
D
151 155Right-handed 310
Helix 60
AG6
D
173 187Right-handed alpha
Helix 61
AG7
D
202 207Right-handed 310
Helix 62
AG8
D
208 218Right-handed alpha
Helix 63
AG9
D
243 251Right-handed alpha
Helix 64
AH1
D
254 266Right-handed alpha
Helix 65
AH2
D
274 276Right-handed 310
Helix 66
AH3
D
277 287Right-handed alpha
Helix 67
AH4
D
288 293Right-handed 310
Helix 68
AH5
D
304 314Right-handed alpha
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There are 8 sheets in PDB entry 8AVZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 237first strand
Strand 2
A
228 230anti-parallel
Strand 3
A
94 97parallel
Strand 4
A
5 9parallel
Strand 5
A
269 272parallel
Strand 6
A
295 297parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 164first strand
Strand 2
A
167 172anti-parallel
Strand 3
A
136 140anti-parallel
Strand 4
A
191 193anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 236first strand
Strand 2
B
228 230anti-parallel
Strand 3
B
94 97parallel
Strand 4
B
5 9parallel
Strand 5
B
269 272parallel
Strand 6
B
295 297parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 164first strand
Strand 2
B
167 172anti-parallel
Strand 3
B
136 140anti-parallel
Strand 4
B
191 193anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
235 237first strand
Strand 2
C
228 230anti-parallel
Strand 3
C
94 97parallel
Strand 4
C
5 9parallel
Strand 5
C
269 272parallel
Strand 6
C
295 297parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
158 164first strand
Strand 2
C
167 172anti-parallel
Strand 3
C
136 140anti-parallel
Strand 4
C
191 193anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
235 237first strand
Strand 2
D
228 230anti-parallel
Strand 3
D
94 97parallel
Strand 4
D
5 9parallel
Strand 5
D
269 272parallel
Strand 6
D
295 297parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
158 164first strand
Strand 2
D
167 172anti-parallel
Strand 3
D
136 140anti-parallel
Strand 4
D
191 193anti-parallel
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