Analysis of interatomic Contacts of Structural Units in PDB entry:
8AW3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AW3 entry

There are 3 chains in PDB entry 8AW3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 G 1 C 74
2
 GLU 19ASP 221
3
 SER 0ASP 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8AW3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
2
24 42Right-handed alpha
Helix 2
AA2
2
53 56Right-handed 310
Helix 3
AA3
2
57 61Right-handed 310
Helix 4
AA4
2
65 72Right-handed alpha
Helix 5
AA5
2
91 103Right-handed alpha
Helix 6
AA6
2
136 146Right-handed alpha
Helix 7
AA7
2
193 207Right-handed alpha
Helix 8
AA8
3
23 38Right-handed alpha
Helix 9
AA9
3
41 45Right-handed 310
Helix 10
AB1
3
117 129Right-handed alpha
Helix 11
AB2
3
147 154Right-handed alpha
Helix 12
AB3
3
172 186Right-handed alpha
Helix 13
AB4
3
186 195Right-handed alpha
Helix 14
AB5
3
220 224Right-handed 310
Helix 15
AB6
3
254 259Right-handed alpha
Helix 16
AB7
3
291 301Right-handed alpha
Helix 17
AB8
3
323 327Right-handed 310
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There are 3 sheets in PDB entry 8AW3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
73 78first strand
Strand 2
2
47 51anti-parallel
Strand 3
2
128 133anti-parallel
Strand 4
2
151 155parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
1 4first strand
Strand 2
3
335 339anti-parallel
Strand 3
3
305 308parallel
Strand 4
3
283 285parallel
Strand 5
3
205 208anti-parallel
Strand 6
3
214 218anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
106 111first strand
Strand 2
3
13 21anti-parallel
Strand 3
3
135 140anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il