Analysis of interatomic Contacts of Structural Units in PDB entry:
8AW6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AW6 entry

There are 3 chains in PDB entry 8AW6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 54THR 282
B
 ARG 14ALA 260
C
 PRO 3GLN 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8AW6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 69Right-handed alpha
Helix 2
AA2
A
85 89Right-handed 310
Helix 3
AA3
A
100 108Right-handed alpha
Helix 4
AA4
A
159 163Right-handed 310
Helix 5
AA5
B
83 87Right-handed 310
Helix 6
AA6
B
89 99Right-handed alpha
Helix 7
AA7
B
142 146Right-handed 310
Helix 8
AA8
B
169 173Right-handed 310
Helix 9
AA9
B
178 185Right-handed 310
Helix 10
AB1
C
43 48Right-handed alpha
Helix 11
AB2
C
98 105Right-handed alpha
Helix 12
AB3
C
144 151Right-handed alpha
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There are 10 sheets in PDB entry 8AW6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 80first strand
Strand 2
A
233 250anti-parallel
Strand 3
A
110 126anti-parallel
Strand 4
A
192 193anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
110 126anti-parallel
Strand 3
A
233 250anti-parallel
Strand 4
C
39 40anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 173first strand
Strand 2
A
141 147anti-parallel
Strand 3
A
218 224anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 19first strand
Strand 2
B
23 26anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 33first strand
Strand 2
B
197 202parallel
Strand 3
B
101 112anti-parallel
Strand 4
B
239 251anti-parallel
Strand 5
B
64 71anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 33first strand
Strand 2
B
197 202parallel
Strand 3
B
101 112anti-parallel
Strand 4
B
211 212anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 154first strand
Strand 2
B
78 82anti-parallel
Strand 3
B
219 230anti-parallel
Strand 4
B
119 128anti-parallel
Strand 5
B
187 191anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
207 214anti-parallel
Strand 3
C
107 121anti-parallel
Strand 4
C
163 172anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 73first strand
Strand 2
C
207 214anti-parallel
Strand 3
C
107 121anti-parallel
Strand 4
C
220 225anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 87first strand
Strand 2
C
188 193anti-parallel
Strand 3
C
129 135anti-parallel
Strand 4
C
152 157anti-parallel
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