Analysis of interatomic Contacts of Structural Units in PDB entry:
8AWM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AWM entry

There are 3 chains in PDB entry 8AWM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLN 1GLU 227
L
 SER 1PRO 227
A
 GLU 154LEU 468
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8AWM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
29 37Right-handed 310
Helix 2
AA2
H
69 72Right-handed 310
Helix 3
AA3
H
95 99Right-handed 310
Helix 4
AA4
H
202 204Right-handed 310
Helix 5
AA5
L
95 99Right-handed 310
Helix 6
AA6
L
140 145Right-handed alpha
Helix 7
AA7
L
200 206Right-handed alpha
Helix 8
AA8
A
175 180Right-handed alpha
Helix 9
AA9
A
191 196Right-handed 310
Helix 10
AB1
A
200 206Right-handed alpha
Helix 11
AB2
A
211 218Right-handed alpha
Helix 12
AB3
A
239 245Right-handed alpha
Helix 13
AB4
A
368 370Right-handed 310
Helix 14
AB5
A
398 402Right-handed 310
Helix 15
AB6
A
416 423Right-handed alpha
Helix 16
AB7
A
426 430Right-handed 310
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There are 16 sheets in PDB entry 8AWM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
19 26anti-parallel
Strand 3
H
86 91anti-parallel
Strand 4
H
76 81anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
12 13first strand
Strand 2
H
122 126parallel
Strand 3
H
100 107anti-parallel
Strand 4
H
38 44anti-parallel
Strand 5
H
50 56anti-parallel
Strand 6
H
65 67anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
12 13first strand
Strand 2
H
122 126parallel
Strand 3
H
100 107anti-parallel
Strand 4
H
115 118anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
135 139first strand
Strand 2
H
150 160anti-parallel
Strand 3
H
191 200anti-parallel
Strand 4
H
178 185anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
165 169first strand
Strand 2
H
210 215anti-parallel
Strand 3
H
220 225anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 13first strand
Strand 2
L
120 124parallel
Strand 3
L
100 106anti-parallel
Strand 4
L
39 44anti-parallel
Strand 5
L
51 54anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 13first strand
Strand 2
L
120 124parallel
Strand 3
L
100 106anti-parallel
Strand 4
L
115 116anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
19 24first strand
Strand 2
L
86 91anti-parallel
Strand 3
L
76 83anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
133 137first strand
Strand 2
L
149 158anti-parallel
Strand 3
L
191 199anti-parallel
Strand 4
L
178 185anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
164 169first strand
Strand 2
L
210 215anti-parallel
Strand 3
L
220 225anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
266 270parallel
Strand 3
A
256 260anti-parallel
Strand 4
A
297 298parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 277first strand
Strand 2
A
284 285anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 304first strand
Strand 2
A
456 467anti-parallel
Strand 3
A
321 324anti-parallel
Strand 4
A
327 328anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 304first strand
Strand 2
A
456 467anti-parallel
Strand 3
A
336 347anti-parallel
Strand 4
A
354 355anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 364first strand
Strand 2
A
442 447anti-parallel
Strand 3
A
450 452anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 396first strand
Strand 2
A
372 376anti-parallel
Strand 3
A
432 436anti-parallel
Strand 4
A
413 415parallel
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