Analysis of interatomic Contacts of Structural Units in PDB entry:
8AXB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AXB entry

There are 2 chains in PDB entry 8AXB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2THR 636
B
 A 11 G 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8AXB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 26Right-handed alpha
Helix 2
AA2
A
28 41Right-handed alpha
Helix 3
AA3
A
44 50Right-handed alpha
Helix 4
AA4
A
56 64Right-handed alpha
Helix 5
AA5
A
65 67Right-handed 310
Helix 6
AA6
A
69 73Right-handed 310
Helix 7
AA7
A
76 95Right-handed alpha
Helix 8
AA8
A
287 289Right-handed 310
Helix 9
AA9
A
318 338Right-handed alpha
Helix 10
AB1
A
380 382Right-handed 310
Helix 11
AB2
A
383 395Right-handed alpha
Helix 12
AB3
A
476 482Right-handed alpha
Helix 13
AB4
A
484 505Right-handed alpha
Helix 14
AB5
A
518 538Right-handed alpha
Helix 15
AB6
A
547 550Right-handed 310
Helix 16
AB7
A
551 567Right-handed alpha
Helix 17
AB8
A
570 585Right-handed alpha
Helix 18
AB9
A
589 605Right-handed alpha
Helix 19
AC1
A
618 635Right-handed alpha
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There are 3 sheets in PDB entry 8AXB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 285first strand
Strand 2
A
349 355anti-parallel
Strand 3
A
372 378anti-parallel
Strand 4
A
3 11anti-parallel
Strand 5
A
314 316anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 295first strand
Strand 2
A
301 305anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 473first strand
Strand 2
A
459 465anti-parallel
Strand 3
A
447 453anti-parallel
Strand 4
A
543 545parallel
Strand 5
A
608 610parallel
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