Analysis of interatomic Contacts of Structural Units in PDB entry:
8AXC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AXC entry

There are 4 chains in PDB entry 8AXC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 29GLU 550
B
 SER 29GLU 560
C
 GLU 31GLU 550
D
 PRO 30LEU 561
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are108 helices in PDB entry 8AXC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 74Right-handed 310
Helix 2
AA2
A
100 107Right-handed alpha
Helix 3
AA3
A
115 119Right-handed 310
Helix 4
AA4
A
157 161Right-handed 310
Helix 5
AA5
A
163 171Right-handed alpha
Helix 6
AA6
A
181 187Right-handed alpha
Helix 7
AA7
A
197 214Right-handed alpha
Helix 8
AA8
A
215 217Right-handed 310
Helix 9
AA9
A
230 242Right-handed alpha
Helix 10
AB1
A
243 246Right-handed 310
Helix 11
AB2
A
261 265Right-handed 310
Helix 12
AB3
A
269 281Right-handed alpha
Helix 13
AB4
A
286 296Right-handed alpha
Helix 14
AB5
A
298 307Right-handed alpha
Helix 15
AB6
A
324 331Right-handed alpha
Helix 16
AB7
A
350 356Right-handed alpha
Helix 17
AB8
A
358 364Right-handed alpha
Helix 18
AB9
A
369 381Right-handed alpha
Helix 19
AC1
A
384 386Right-handed 310
Helix 20
AC2
A
387 396Right-handed alpha
Helix 21
AC3
A
401 418Right-handed alpha
Helix 22
AC4
A
418 431Right-handed alpha
Helix 23
AC5
A
444 448Right-handed 310
Helix 24
AC6
A
462 468Right-handed alpha
Helix 25
AC7
A
470 474Right-handed 310
Helix 26
AC8
A
479 500Right-handed alpha
Helix 27
AC9
A
533 542Right-handed alpha
Helix 28
AD1
A
542 550Right-handed alpha
Helix 29
AD2
B
70 74Right-handed 310
Helix 30
AD3
B
100 108Right-handed 310
Helix 31
AD4
B
115 119Right-handed 310
Helix 32
AD5
B
157 161Right-handed 310
Helix 33
AD6
B
163 171Right-handed alpha
Helix 34
AD7
B
181 187Right-handed alpha
Helix 35
AD8
B
197 214Right-handed alpha
Helix 36
AD9
B
215 217Right-handed 310
Helix 37
AE1
B
230 242Right-handed alpha
Helix 38
AE2
B
243 246Right-handed 310
Helix 39
AE3
B
261 265Right-handed 310
Helix 40
AE4
B
269 281Right-handed alpha
Helix 41
AE5
B
286 296Right-handed alpha
Helix 42
AE6
B
298 307Right-handed alpha
Helix 43
AE7
B
324 331Right-handed alpha
Helix 44
AE8
B
350 356Right-handed alpha
Helix 45
AE9
B
358 364Right-handed alpha
Helix 46
AF1
B
369 381Right-handed alpha
Helix 47
AF2
B
384 386Right-handed 310
Helix 48
AF3
B
387 396Right-handed alpha
Helix 49
AF4
B
401 418Right-handed alpha
Helix 50
AF5
B
418 431Right-handed alpha
Helix 51
AF6
B
444 448Right-handed 310
Helix 52
AF7
B
462 468Right-handed alpha
Helix 53
AF8
B
470 474Right-handed 310
Helix 54
AF9
B
479 500Right-handed alpha
Helix 55
AG1
B
533 542Right-handed alpha
Helix 56
AG2
B
542 560Right-handed alpha
Helix 57
AG3
C
70 74Right-handed 310
Helix 58
AG4
C
157 161Right-handed 310
Helix 59
AG5
C
163 171Right-handed alpha
Helix 60
AG6
C
181 187Right-handed alpha
Helix 61
AG7
C
197 214Right-handed alpha
Helix 62
AG8
C
215 217Right-handed 310
Helix 63
AG9
C
230 242Right-handed alpha
Helix 64
AH1
C
243 246Right-handed 310
Helix 65
AH2
C
261 265Right-handed 310
Helix 66
AH3
C
269 281Right-handed alpha
Helix 67
AH4
C
286 296Right-handed alpha
Helix 68
AH5
C
298 307Right-handed alpha
Helix 69
AH6
C
324 331Right-handed alpha
Helix 70
AH7
C
350 356Right-handed alpha
Helix 71
AH8
C
358 364Right-handed alpha
Helix 72
AH9
C
369 381Right-handed alpha
Helix 73
AI1
C
384 386Right-handed 310
Helix 74
AI2
C
387 396Right-handed alpha
Helix 75
AI3
C
401 418Right-handed alpha
Helix 76
AI4
C
418 431Right-handed alpha
Helix 77
AI5
C
444 448Right-handed 310
Helix 78
AI6
C
462 468Right-handed alpha
Helix 79
AI7
C
470 474Right-handed 310
Helix 80
AI8
C
479 500Right-handed alpha
Helix 81
AI9
C
533 542Right-handed alpha
Helix 82
AJ1
C
542 550Right-handed alpha
Helix 83
AJ2
D
70 74Right-handed 310
Helix 84
AJ3
D
157 161Right-handed 310
Helix 85
AJ4
D
163 171Right-handed alpha
Helix 86
AJ5
D
181 187Right-handed alpha
Helix 87
AJ6
D
197 214Right-handed alpha
Helix 88
AJ7
D
215 217Right-handed 310
Helix 89
AJ8
D
230 242Right-handed alpha
Helix 90
AJ9
D
243 246Right-handed 310
Helix 91
AK1
D
261 265Right-handed 310
Helix 92
AK2
D
269 281Right-handed alpha
Helix 93
AK3
D
286 296Right-handed alpha
Helix 94
AK4
D
298 307Right-handed alpha
Helix 95
AK5
D
324 331Right-handed alpha
Helix 96
AK6
D
350 356Right-handed alpha
Helix 97
AK7
D
358 364Right-handed alpha
Helix 98
AK8
D
369 381Right-handed alpha
Helix 99
AK9
D
384 386Right-handed 310
Helix 100
AL1
D
387 396Right-handed alpha
Helix 101
AL2
D
401 418Right-handed alpha
Helix 102
AL3
D
418 431Right-handed alpha
Helix 103
AL4
D
444 448Right-handed 310
Helix 104
AL5
D
462 468Right-handed alpha
Helix 105
AL6
D
470 474Right-handed 310
Helix 106
AL7
D
479 500Right-handed alpha
Helix 107
AL8
D
533 542Right-handed alpha
Helix 108
AL9
D
542 561Right-handed alpha
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There are 8 sheets in PDB entry 8AXC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
42 44anti-parallel
Strand 3
A
87 89parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
57 64anti-parallel
Strand 3
A
127 133anti-parallel
Strand 4
A
173 177anti-parallel
Strand 5
A
142 148parallel
Strand 6
A
219 229parallel
Strand 7
A
251 255parallel
Strand 8
A
339 344parallel
Strand 9
A
435 440parallel
Strand 10
A
518 522parallel
Strand 11
A
527 530anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
42 44anti-parallel
Strand 3
B
87 89parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 48first strand
Strand 2
B
57 64anti-parallel
Strand 3
B
127 133anti-parallel
Strand 4
B
173 177anti-parallel
Strand 5
B
142 148parallel
Strand 6
B
219 229parallel
Strand 7
B
251 255parallel
Strand 8
B
339 344parallel
Strand 9
B
435 440parallel
Strand 10
B
518 522parallel
Strand 11
B
527 530anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 36first strand
Strand 2
C
42 44anti-parallel
Strand 3
C
87 89parallel
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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 48first strand
Strand 2
C
57 64anti-parallel
Strand 3
C
127 133anti-parallel
Strand 4
C
173 177anti-parallel
Strand 5
C
142 148parallel
Strand 6
C
219 229parallel
Strand 7
C
251 255parallel
Strand 8
C
339 344parallel
Strand 9
C
435 440parallel
Strand 10
C
518 522parallel
Strand 11
C
527 530anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 36first strand
Strand 2
D
42 44anti-parallel
Strand 3
D
87 89parallel
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There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
46 49first strand
Strand 2
D
56 64anti-parallel
Strand 3
D
127 133anti-parallel
Strand 4
D
173 177anti-parallel
Strand 5
D
142 148parallel
Strand 6
D
219 229parallel
Strand 7
D
251 255parallel
Strand 8
D
339 344parallel
Strand 9
D
435 440parallel
Strand 10
D
518 522parallel
Strand 11
D
527 530anti-parallel
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