Analysis of interatomic Contacts of Structural Units in PDB entry:
8AXF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AXF entry

There are 5 chains in PDB entry 8AXF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 51	ALA 312
Q	U 1	U 42
D	ASP 52	VAL 314
C	SER 51	ALA 312
B	LEU 53	SER 311

There are 48 helices in PDB entry 8AXF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	78	Right-handed 310
Helix 2	AA2	A	83	92	Right-handed alpha
Helix 3	AA3	A	93	104	Right-handed alpha
Helix 4	AA4	A	132	146	Right-handed alpha
Helix 5	AA5	A	177	183	Right-handed alpha
Helix 6	AA6	A	191	195	Right-handed 310
Helix 7	AA7	A	198	205	Right-handed 310
Helix 8	AA8	A	206	220	Right-handed alpha
Helix 9	AA9	A	231	248	Right-handed alpha
Helix 10	AB1	A	253	261	Right-handed alpha
Helix 11	AB2	A	262	275	Right-handed alpha
Helix 12	AB3	A	281	300	Right-handed alpha
Helix 13	AB4	A	300	312	Right-handed alpha
Helix 14	AB5	D	74	79	Right-handed 310
Helix 15	AB6	D	83	93	Right-handed alpha
Helix 16	AB7	D	93	104	Right-handed alpha
Helix 17	AB8	D	132	149	Right-handed alpha
Helix 18	AB9	D	177	182	Right-handed alpha
Helix 19	AC1	D	198	205	Right-handed 310
Helix 20	AC2	D	206	220	Right-handed alpha
Helix 21	AC3	D	231	247	Right-handed alpha
Helix 22	AC4	D	253	261	Right-handed alpha
Helix 23	AC5	D	262	275	Right-handed alpha
Helix 24	AC6	D	281	310	Right-handed alpha
Helix 25	AC7	C	64	69	Right-handed alpha
Helix 26	AC8	C	74	79	Right-handed 310
Helix 27	AC9	C	83	92	Right-handed alpha
Helix 28	AD1	C	93	104	Right-handed alpha
Helix 29	AD2	C	132	149	Right-handed alpha
Helix 30	AD3	C	177	183	Right-handed alpha
Helix 31	AD4	C	189	195	Right-handed 310
Helix 32	AD5	C	198	205	Right-handed 310
Helix 33	AD6	C	206	220	Right-handed alpha
Helix 34	AD7	C	231	248	Right-handed alpha
Helix 35	AD8	C	253	261	Right-handed alpha
Helix 36	AD9	C	262	275	Right-handed alpha
Helix 37	AE1	C	281	311	Right-handed alpha
Helix 38	AE2	B	74	79	Right-handed 310
Helix 39	AE3	B	83	93	Right-handed alpha
Helix 40	AE4	B	93	104	Right-handed alpha
Helix 41	AE5	B	132	149	Right-handed alpha
Helix 42	AE6	B	177	183	Right-handed alpha
Helix 43	AE7	B	198	205	Right-handed 310
Helix 44	AE8	B	206	220	Right-handed alpha
Helix 45	AE9	B	231	248	Right-handed alpha
Helix 46	AF1	B	253	262	Right-handed alpha
Helix 47	AF2	B	262	274	Right-handed alpha
Helix 48	AF3	B	281	311	Right-handed alpha

There are 8 sheets in PDB entry 8AXF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	C	106	109	parallel
Strand 3	C	115	118	anti-parallel
Strand 4	C	130	131	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	115	118	parallel
Strand 3	A	105	109	anti-parallel
Strand 4	B	55	58	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	154	first strand
Strand 2	A	159	162	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	57	first strand
Strand 2	B	106	111	parallel
Strand 3	B	114	118	anti-parallel
Strand 4	B	130	131	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	115	118	parallel
Strand 3	D	106	109	anti-parallel
Strand 4	C	56	57	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	154	first strand
Strand 2	D	159	162	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	154	first strand
Strand 2	C	159	162	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	154	first strand
Strand 2	B	159	162	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AXF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AXF