Analysis of interatomic Contacts of Structural Units in PDB entry:
8AXX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AXX entry

There are 3 chains in PDB entry 8AXX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 60THR 283
B
 ARG 14GLN 259
C
 PRO 3GLN 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 8AXX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 68Right-handed alpha
Helix 2
AA2
A
100 105Right-handed alpha
Helix 3
AA3
A
159 163Right-handed 310
Helix 4
AA4
B
94 99Right-handed alpha
Helix 5
AA5
B
181 185Right-handed 310
Helix 6
AA6
C
92 96Right-handed 310
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There are 10 sheets in PDB entry 8AXX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 80first strand
Strand 2
A
233 250anti-parallel
Strand 3
A
110 126anti-parallel
Strand 4
A
192 193anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 183first strand
Strand 2
A
110 126anti-parallel
Strand 3
A
233 250anti-parallel
Strand 4
C
39 40anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 173first strand
Strand 2
A
141 147anti-parallel
Strand 3
A
218 220anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 173first strand
Strand 2
A
141 147anti-parallel
Strand 3
A
223 224anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
197 202parallel
Strand 3
B
102 112anti-parallel
Strand 4
B
239 252anti-parallel
Strand 5
B
64 65anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
239 252anti-parallel
Strand 3
B
69 71anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 154first strand
Strand 2
B
78 82anti-parallel
Strand 3
B
219 224anti-parallel
Strand 4
B
121 128anti-parallel
Strand 5
B
187 191anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
207 216anti-parallel
Strand 3
C
107 120anti-parallel
Strand 4
C
163 172anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 73first strand
Strand 2
C
207 216anti-parallel
Strand 3
C
107 120anti-parallel
Strand 4
C
221 225anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 87first strand
Strand 2
C
188 199anti-parallel
Strand 3
C
127 135anti-parallel
Strand 4
C
152 157anti-parallel
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