Analysis of interatomic Contacts of Structural Units in PDB entry:
8AY8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AY8 entry

There are 2 chains in PDB entry 8AY8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 20GLN 207
B
 CYS 186ARG 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 8AY8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 29Right-handed 310
Helix 2
AA2
A
35 50Right-handed alpha
Helix 3
AA3
A
70 79Right-handed alpha
Helix 4
AA4
A
83 87Right-handed 310
Helix 5
AA5
A
181 206Right-handed alpha
Helix 6
AA6
B
218 220Right-handed 310
Helix 7
AA7
B
248 273Right-handed alpha
Helix 8
AA8
B
282 302Right-handed alpha
Helix 9
AA9
B
368 378Right-handed alpha
Helix 10
AB1
B
403 406Right-handed 310
Helix 11
AB2
B
431 436Right-handed alpha
Helix 12
AB3
B
439 459Right-handed alpha
Helix 13
AB4
B
471 488Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8AY8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
53 54anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 67first strand
Strand 2
A
163 175anti-parallel
Strand 3
A
150 160anti-parallel
Strand 4
A
134 141anti-parallel
Strand 5
A
120 129anti-parallel
Strand 6
A
107 112anti-parallel
Strand 7
A
91 96anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 195first strand
Strand 2
B
494 500anti-parallel
Strand 3
B
424 430anti-parallel
Strand 4
B
348 353anti-parallel
Strand 5
B
356 359anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 216first strand
Strand 2
B
233 245anti-parallel
Strand 3
B
326 327anti-parallel
Strand 4
B
400 401anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 216first strand
Strand 2
B
233 245anti-parallel
Strand 3
B
329 334anti-parallel
Strand 4
B
338 344anti-parallel
Strand 5
B
414 419anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
382 384first strand
Strand 2
B
388 390anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il