Analysis of interatomic Contacts of Structural Units in PDB entry:
8AYF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AYF entry

There are 4 chains in PDB entry 8AYF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 111HIS 352
A
 TYR 354ASP 553
B
 LEU 106HIS 352
B
 TYR 354ASP 553
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8AYF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
122 132Right-handed alpha
Helix 2
AA2
A
133 135Right-handed 310
Helix 3
AA3
A
137 142Right-handed alpha
Helix 4
AA4
A
153 167Right-handed alpha
Helix 5
AA5
A
178 196Right-handed alpha
Helix 6
AA6
A
209 228Right-handed alpha
Helix 7
AA7
A
243 253Right-handed alpha
Helix 8
AA8
A
268 275Right-handed alpha
Helix 9
AA9
A
297 309Right-handed alpha
Helix 10
AB1
A
319 324Right-handed alpha
Helix 11
AB2
A
325 330Right-handed alpha
Helix 12
AB3
A
368 373Right-handed alpha
Helix 13
AB4
A
397 435Right-handed alpha
Helix 14
AB5
A
459 470Right-handed alpha
Helix 15
AB6
A
488 495Right-handed alpha
Helix 16
AB7
A
496 513Right-handed alpha
Helix 17
AB8
A
521 532Right-handed alpha
Helix 18
AB9
A
534 550Right-handed alpha
Helix 19
AC1
B
122 135Right-handed alpha
Helix 20
AC2
B
153 167Right-handed alpha
Helix 21
AC3
B
178 196Right-handed alpha
Helix 22
AC4
B
209 228Right-handed alpha
Helix 23
AC5
B
243 253Right-handed alpha
Helix 24
AC6
B
268 276Right-handed alpha
Helix 25
AC7
B
297 308Right-handed alpha
Helix 26
AC8
B
319 324Right-handed alpha
Helix 27
AC9
B
368 373Right-handed alpha
Helix 28
AD1
B
374 376Right-handed 310
Helix 29
AD2
B
397 435Right-handed alpha
Helix 30
AD3
B
460 470Right-handed alpha
Helix 31
AD4
B
488 495Right-handed alpha
Helix 32
AD5
B
496 514Right-handed alpha
Helix 33
AD6
B
520 532Right-handed alpha
Helix 34
AD7
B
534 550Right-handed alpha
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There are 6 sheets in PDB entry 8AYF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 207first strand
Strand 2
A
362 366anti-parallel
Strand 3
A
344 349anti-parallel
Strand 4
A
312 315parallel
Strand 5
A
280 286parallel
Strand 6
A
234 238parallel
Strand 7
A
255 259parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 379first strand
Strand 2
A
387 389anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 442first strand
Strand 2
A
450 454anti-parallel
Strand 3
A
483 486anti-parallel
Strand 4
A
475 476anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 207first strand
Strand 2
B
362 366anti-parallel
Strand 3
B
346 349anti-parallel
Strand 4
B
312 316parallel
Strand 5
B
280 286parallel
Strand 6
B
234 238parallel
Strand 7
B
255 259parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 379first strand
Strand 2
B
387 389anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
441 442first strand
Strand 2
B
450 454anti-parallel
Strand 3
B
482 486anti-parallel
Strand 4
B
475 477anti-parallel
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