Analysis of interatomic Contacts of Structural Units in PDB entry:
8AYM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8AYM entry

There are 6 chains in PDB entry 8AYM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	GLU 16	HIS 234
C	ASN 388	ARG 815
D	VAL 395	ARG 819
B	VAL 395	ARG 819
A	ASN 388	ARG 815
J	GLU 16	HIS 234

There are 74 helices in PDB entry 8AYM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	I	19	40	Right-handed alpha
Helix 2	AA2	I	115	128	Right-handed alpha
Helix 3	AA3	I	128	150	Right-handed alpha
Helix 4	AA4	I	155	184	Right-handed alpha
Helix 5	AA5	I	202	233	Right-handed alpha
Helix 6	AA6	C	412	415	Right-handed 310
Helix 7	AA7	C	419	433	Right-handed alpha
Helix 8	AA8	C	457	465	Right-handed alpha
Helix 9	AA9	C	478	484	Right-handed alpha
Helix 10	AB1	C	518	541	Right-handed alpha
Helix 11	AB2	C	543	548	Right-handed alpha
Helix 12	AB3	C	568	581	Right-handed alpha
Helix 13	AB4	C	591	625	Right-handed alpha
Helix 14	AB5	C	631	638	Right-handed alpha
Helix 15	AB6	C	649	658	Right-handed alpha
Helix 16	AB7	C	660	673	Right-handed alpha
Helix 17	AB8	C	681	692	Right-handed alpha
Helix 18	AB9	C	702	710	Right-handed alpha
Helix 19	AC1	C	738	752	Right-handed alpha
Helix 20	AC2	C	753	764	Right-handed alpha
Helix 21	AC3	C	788	815	Right-handed alpha
Helix 22	AC4	D	416	419	Right-handed 310
Helix 23	AC5	D	423	437	Right-handed alpha
Helix 24	AC6	D	461	469	Right-handed alpha
Helix 25	AC7	D	482	487	Right-handed alpha
Helix 26	AC8	D	522	547	Right-handed alpha
Helix 27	AC9	D	572	585	Right-handed alpha
Helix 28	AD1	D	595	626	Right-handed alpha
Helix 29	AD2	D	636	642	Right-handed alpha
Helix 30	AD3	D	653	662	Right-handed alpha
Helix 31	AD4	D	664	676	Right-handed alpha
Helix 32	AD5	D	685	696	Right-handed alpha
Helix 33	AD6	D	706	714	Right-handed alpha
Helix 34	AD7	D	742	757	Right-handed alpha
Helix 35	AD8	D	757	767	Right-handed alpha
Helix 36	AD9	D	776	780	Right-handed 310
Helix 37	AE1	D	792	819	Right-handed alpha
Helix 38	AE2	B	416	419	Right-handed 310
Helix 39	AE3	B	423	437	Right-handed alpha
Helix 40	AE4	B	461	469	Right-handed alpha
Helix 41	AE5	B	482	487	Right-handed alpha
Helix 42	AE6	B	522	547	Right-handed alpha
Helix 43	AE7	B	572	585	Right-handed alpha
Helix 44	AE8	B	595	626	Right-handed alpha
Helix 45	AE9	B	636	642	Right-handed alpha
Helix 46	AF1	B	653	662	Right-handed alpha
Helix 47	AF2	B	664	676	Right-handed alpha
Helix 48	AF3	B	685	696	Right-handed alpha
Helix 49	AF4	B	706	714	Right-handed alpha
Helix 50	AF5	B	742	757	Right-handed alpha
Helix 51	AF6	B	757	767	Right-handed alpha
Helix 52	AF7	B	776	780	Right-handed 310
Helix 53	AF8	B	792	819	Right-handed alpha
Helix 54	AF9	A	412	415	Right-handed 310
Helix 55	AG1	A	419	433	Right-handed alpha
Helix 56	AG2	A	457	465	Right-handed alpha
Helix 57	AG3	A	478	484	Right-handed alpha
Helix 58	AG4	A	518	541	Right-handed alpha
Helix 59	AG5	A	543	548	Right-handed alpha
Helix 60	AG6	A	568	581	Right-handed alpha
Helix 61	AG7	A	591	625	Right-handed alpha
Helix 62	AG8	A	631	638	Right-handed alpha
Helix 63	AG9	A	649	658	Right-handed alpha
Helix 64	AH1	A	660	673	Right-handed alpha
Helix 65	AH2	A	681	692	Right-handed alpha
Helix 66	AH3	A	702	710	Right-handed alpha
Helix 67	AH4	A	738	752	Right-handed alpha
Helix 68	AH5	A	753	764	Right-handed alpha
Helix 69	AH6	A	788	815	Right-handed alpha
Helix 70	AH7	J	19	40	Right-handed alpha
Helix 71	AH8	J	115	128	Right-handed alpha
Helix 72	AH9	J	128	150	Right-handed alpha
Helix 73	AI1	J	155	184	Right-handed alpha
Helix 74	AI2	J	202	233	Right-handed alpha

There are 22 sheets in PDB entry 8AYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	45	46	first strand
Strand 2	I	200	201	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	88	90	first strand
Strand 2	I	100	102	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	392	first strand
Strand 2	C	436	437	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	404	first strand
Strand 2	C	417	418	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	471	476	first strand
Strand 2	C	726	733	anti-parallel
Strand 3	C	485	487	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	471	476	first strand
Strand 2	C	726	733	anti-parallel
Strand 3	C	492	494	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	644	first strand
Strand 2	C	696	701	parallel
Strand 3	C	496	501	anti-parallel
Strand 4	C	716	719	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	441	442	first strand
Strand 2	D	396	398	parallel
Strand 3	D	474	475	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	421	422	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	498	first strand
Strand 2	D	730	737	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	648	first strand
Strand 2	D	700	705	parallel
Strand 3	D	500	505	anti-parallel
Strand 4	D	720	723	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	442	first strand
Strand 2	B	396	398	parallel
Strand 3	B	474	475	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	498	first strand
Strand 2	B	730	737	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	648	first strand
Strand 2	B	700	705	parallel
Strand 3	B	500	505	anti-parallel
Strand 4	B	720	723	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	392	first strand
Strand 2	A	436	437	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	417	418	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	476	first strand
Strand 2	A	726	733	anti-parallel
Strand 3	A	485	487	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	476	first strand
Strand 2	A	726	733	anti-parallel
Strand 3	A	492	494	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	644	first strand
Strand 2	A	696	701	parallel
Strand 3	A	496	501	anti-parallel
Strand 4	A	716	719	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	45	46	first strand
Strand 2	J	200	201	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	88	90	first strand
Strand 2	J	100	102	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8AYM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8AYM