Analysis of interatomic Contacts of Structural Units in PDB entry:
8AZB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8AZB entry

There is 1 chain in PDB entry 8AZB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 21ASN 521
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 8AZB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 53Right-handed alpha
Helix 2
AA2
A
99 112Right-handed alpha
Helix 3
AA3
A
119 126Right-handed 310
Helix 4
AA4
A
128 134Right-handed alpha
Helix 5
AA5
A
138 142Right-handed 310
Helix 6
AA6
A
162 167Right-handed alpha
Helix 7
AA7
A
168 173Right-handed 310
Helix 8
AA8
A
176 183Right-handed alpha
Helix 9
AA9
A
185 193Right-handed 310
Helix 10
AB1
A
220 224Right-handed 310
Helix 11
AB2
A
236 246Right-handed alpha
Helix 12
AB3
A
258 263Right-handed alpha
Helix 13
AB4
A
290 301Right-handed alpha
Helix 14
AB5
A
302 310Right-handed alpha
Helix 15
AB6
A
333 339Right-handed alpha
Helix 16
AB7
A
345 361Right-handed alpha
Helix 17
AB8
A
375 394Right-handed alpha
Helix 18
AB9
A
403 413Right-handed alpha
Helix 19
AC1
A
430 435Right-handed alpha
Helix 20
AC2
A
436 438Right-handed 310
Helix 21
AC3
A
450 462Right-handed alpha
Helix 22
AC4
A
465 484Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 8AZB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 27first strand
Strand 2
A
228 232parallel
Strand 3
A
209 214anti-parallel
Strand 4
A
199 205anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
65 67anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 75first strand
Strand 2
A
81 86anti-parallel
Strand 3
A
151 155anti-parallel
Strand 4
A
144 148anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 252first strand
Strand 2
A
486 498anti-parallel
Strand 3
A
316 317anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 252first strand
Strand 2
A
486 498anti-parallel
Strand 3
A
268 281anti-parallel
Strand 4
A
418 423anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 373first strand
Strand 2
A
397 402parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 503first strand
Strand 2
A
519 520anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il