Analysis of interatomic Contacts of Structural Units in PDB entry:
8B0A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8B0A entry

There are 11 chains in PDB entry 8B0A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	THR 42	THR 500
A	PRO 38	ARG 134
B	LYS 16	GLY 102
C	LYS 15	LYS 118
D	LYS 28	LYS 122
E	PRO 38	ALA 135
F	LYS 20	GLY 102
G	ALA 14	LYS 118
H	LYS 28	ALA 121
I	A -72	C 76
J	G -76	T 72

There are 62 helices in PDB entry 8B0A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	48	63	Right-handed alpha
Helix 2	AA2	K	76	91	Right-handed alpha
Helix 3	AA3	K	103	105	Right-handed 310
Helix 4	AA4	K	106	118	Right-handed alpha
Helix 5	AA5	K	129	140	Right-handed alpha
Helix 6	AA6	K	152	159	Right-handed alpha
Helix 7	AA7	K	159	165	Right-handed alpha
Helix 8	AA8	K	175	181	Right-handed 310
Helix 9	AA9	K	184	193	Right-handed alpha
Helix 10	AB1	K	209	219	Right-handed alpha
Helix 11	AB2	K	221	230	Right-handed alpha
Helix 12	AB3	K	231	237	Right-handed alpha
Helix 13	AB4	K	238	241	Right-handed 310
Helix 14	AB5	K	246	255	Right-handed alpha
Helix 15	AB6	K	262	267	Right-handed alpha
Helix 16	AB7	K	283	294	Right-handed alpha
Helix 17	AB8	K	299	304	Right-handed alpha
Helix 18	AB9	K	314	324	Right-handed alpha
Helix 19	AC1	K	325	328	Right-handed 310
Helix 20	AC2	K	340	345	Right-handed alpha
Helix 21	AC3	K	346	362	Right-handed alpha
Helix 22	AC4	K	372	387	Right-handed alpha
Helix 23	AC5	K	398	410	Right-handed alpha
Helix 24	AC6	K	444	453	Right-handed alpha
Helix 25	AC7	K	474	495	Right-handed alpha
Helix 26	AC8	A	44	57	Right-handed alpha
Helix 27	AC9	A	63	75	Right-handed alpha
Helix 28	AD1	A	76	78	Right-handed 310
Helix 29	AD2	A	85	114	Right-handed alpha
Helix 30	AD3	A	120	131	Right-handed alpha
Helix 31	AD4	B	24	29	Right-handed 310
Helix 32	AD5	B	30	41	Right-handed alpha
Helix 33	AD6	B	49	76	Right-handed alpha
Helix 34	AD7	B	82	93	Right-handed alpha
Helix 35	AD8	C	16	22	Right-handed alpha
Helix 36	AD9	C	26	37	Right-handed alpha
Helix 37	AE1	C	46	73	Right-handed alpha
Helix 38	AE2	C	79	89	Right-handed alpha
Helix 39	AE3	C	90	97	Right-handed alpha
Helix 40	AE4	C	112	116	Right-handed 310
Helix 41	AE5	D	34	46	Right-handed alpha
Helix 42	AE6	D	52	81	Right-handed alpha
Helix 43	AE7	D	87	99	Right-handed alpha
Helix 44	AE8	D	100	121	Right-handed alpha
Helix 45	AE9	E	44	57	Right-handed alpha
Helix 46	AF1	E	63	76	Right-handed alpha
Helix 47	AF2	E	85	114	Right-handed alpha
Helix 48	AF3	E	120	131	Right-handed alpha
Helix 49	AF4	F	24	29	Right-handed 310
Helix 50	AF5	F	30	41	Right-handed alpha
Helix 51	AF6	F	49	76	Right-handed alpha
Helix 52	AF7	F	82	93	Right-handed alpha
Helix 53	AF8	G	16	22	Right-handed alpha
Helix 54	AF9	G	26	37	Right-handed alpha
Helix 55	AG1	G	46	73	Right-handed alpha
Helix 56	AG2	G	79	90	Right-handed alpha
Helix 57	AG3	G	90	97	Right-handed alpha
Helix 58	AG4	G	112	116	Right-handed 310
Helix 59	AG5	H	34	46	Right-handed alpha
Helix 60	AG6	H	52	81	Right-handed alpha
Helix 61	AG7	H	87	99	Right-handed alpha
Helix 62	AG8	H	102	119	Right-handed alpha

There are 12 sheets in PDB entry 8B0A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	123	125	first strand
Strand 2	K	148	151	parallel
Strand 3	K	98	101	parallel
Strand 4	K	168	173	parallel
Strand 5	K	195	201	parallel
Strand 6	K	67	69	parallel
Strand 7	K	258	259	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	275	280	first strand
Strand 2	K	465	471	parallel
Strand 3	K	435	438	parallel
Strand 4	K	366	370	parallel
Strand 5	K	416	420	parallel
Strand 6	K	390	393	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	G	101	102	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	F	97	98	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	50	51	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8B0A

Analysis of interatomic Contacts of Structural Units in PDB entry:
8B0A