Analysis of interatomic Contacts of Structural Units in PDB entry:
8B0I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B0I entry

There are 5 chains in PDB entry 8B0I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 282
B
 MET 1ARG 282
D
 MET 1ARG 282
C
 VAL 2ARG 282
K
 C 14 G 139
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 8B0I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 24Right-handed alpha
Helix 2
AA2
A
36 48Right-handed alpha
Helix 3
AA3
A
63 74Right-handed alpha
Helix 4
AA4
A
88 96Right-handed alpha
Helix 5
AA5
A
114 129Right-handed alpha
Helix 6
AA6
A
140 153Right-handed alpha
Helix 7
AA7
A
188 192Right-handed 310
Helix 8
AA8
A
202 212Right-handed alpha
Helix 9
AA9
A
212 235Right-handed alpha
Helix 10
AB1
A
252 268Right-handed alpha
Helix 11
AB2
A
276 281Right-handed alpha
Helix 12
AB3
B
13 25Right-handed alpha
Helix 13
AB4
B
36 41Right-handed alpha
Helix 14
AB5
B
41 47Right-handed alpha
Helix 15
AB6
B
64 73Right-handed alpha
Helix 16
AB7
B
88 99Right-handed alpha
Helix 17
AB8
B
111 123Right-handed alpha
Helix 18
AB9
B
123 129Right-handed alpha
Helix 19
AC1
B
140 155Right-handed alpha
Helix 20
AC2
B
202 212Right-handed alpha
Helix 21
AC3
B
212 235Right-handed alpha
Helix 22
AC4
B
254 269Right-handed alpha
Helix 23
AC5
D
13 25Right-handed alpha
Helix 24
AC6
D
33 35Right-handed 310
Helix 25
AC7
D
36 46Right-handed alpha
Helix 26
AC8
D
63 72Right-handed alpha
Helix 27
AC9
D
88 99Right-handed alpha
Helix 28
AD1
D
111 130Right-handed alpha
Helix 29
AD2
D
140 148Right-handed alpha
Helix 30
AD3
D
149 151Right-handed 310
Helix 31
AD4
D
188 192Right-handed 310
Helix 32
AD5
D
205 212Right-handed alpha
Helix 33
AD6
D
212 228Right-handed alpha
Helix 34
AD7
D
229 235Right-handed alpha
Helix 35
AD8
D
250 269Right-handed alpha
Helix 36
AD9
C
14 25Right-handed alpha
Helix 37
AE1
C
35 48Right-handed alpha
Helix 38
AE2
C
64 74Right-handed alpha
Helix 39
AE3
C
125 130Right-handed alpha
Helix 40
AE4
C
140 145Right-handed alpha
Helix 41
AE5
C
148 152Right-handed alpha
Helix 42
AE6
C
188 192Right-handed 310
Helix 43
AE7
C
202 212Right-handed alpha
Helix 44
AE8
C
212 235Right-handed alpha
Helix 45
AE9
C
251 269Right-handed alpha
Helix 46
AF1
C
278 281Right-handed 310
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There are 10 sheets in PDB entry 8B0I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
80 84parallel
Strand 3
A
132 133parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 168first strand
Strand 2
A
243 247parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
B
179 182anti-parallel
Strand 3
B
244 247parallel
Strand 4
B
166 168parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
2 6parallel
Strand 3
B
79 86parallel
Strand 4
B
132 135parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 163first strand
Strand 2
B
240 242parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 6first strand
Strand 2
D
82 86parallel
Strand 3
D
132 135parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 30first strand
Strand 2
D
51 54parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
272 274first strand
Strand 2
D
162 168parallel
Strand 3
D
243 247parallel
Strand 4
D
179 181parallel
Strand 5
C
180 181anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 30first strand
Strand 2
C
51 54parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
244 246first strand
Strand 2
C
162 167parallel
Strand 3
C
272 276parallel
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