Analysis of interatomic Contacts of Structural Units in PDB entry:
8B0J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8B0J entry

There are 7 chains in PDB entry 8B0J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 282
B	LEU 3	ARG 282
D	MET 1	LYS 281
C	MET 1	ARG 282
L	LYS 2	LEU 502
N	MET 1	MET 510
K	G 7	U 207

There are 80 helices in PDB entry 8B0J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	25	Right-handed alpha
Helix 2	AA2	A	33	35	Right-handed 310
Helix 3	AA3	A	36	48	Right-handed alpha
Helix 4	AA4	A	63	74	Right-handed alpha
Helix 5	AA5	A	88	96	Right-handed alpha
Helix 6	AA6	A	113	130	Right-handed alpha
Helix 7	AA7	A	140	154	Right-handed alpha
Helix 8	AA8	A	188	196	Right-handed 310
Helix 9	AA9	A	202	212	Right-handed alpha
Helix 10	AB1	A	212	235	Right-handed alpha
Helix 11	AB2	A	252	268	Right-handed alpha
Helix 12	AB3	A	278	282	Right-handed 310
Helix 13	AB4	B	13	25	Right-handed alpha
Helix 14	AB5	B	33	35	Right-handed 310
Helix 15	AB6	B	36	48	Right-handed alpha
Helix 16	AB7	B	63	73	Right-handed alpha
Helix 17	AB8	B	88	97	Right-handed alpha
Helix 18	AB9	B	104	109	Right-handed alpha
Helix 19	AC1	B	111	130	Right-handed alpha
Helix 20	AC2	B	140	153	Right-handed alpha
Helix 21	AC3	B	170	172	Right-handed 310
Helix 22	AC4	B	188	192	Right-handed 310
Helix 23	AC5	B	202	212	Right-handed alpha
Helix 24	AC6	B	212	236	Right-handed alpha
Helix 25	AC7	B	252	268	Right-handed alpha
Helix 26	AC8	B	278	280	Right-handed 310
Helix 27	AC9	D	13	25	Right-handed alpha
Helix 28	AD1	D	36	48	Right-handed alpha
Helix 29	AD2	D	64	73	Right-handed alpha
Helix 30	AD3	D	88	97	Right-handed alpha
Helix 31	AD4	D	111	129	Right-handed alpha
Helix 32	AD5	D	142	151	Right-handed alpha
Helix 33	AD6	D	188	192	Right-handed 310
Helix 34	AD7	D	202	211	Right-handed alpha
Helix 35	AD8	D	213	228	Right-handed alpha
Helix 36	AD9	D	229	235	Right-handed alpha
Helix 37	AE1	D	253	269	Right-handed alpha
Helix 38	AE2	D	276	281	Right-handed alpha
Helix 39	AE3	C	13	24	Right-handed alpha
Helix 40	AE4	C	33	35	Right-handed 310
Helix 41	AE5	C	36	48	Right-handed alpha
Helix 42	AE6	C	56	60	Right-handed 310
Helix 43	AE7	C	63	74	Right-handed alpha
Helix 44	AE8	C	88	95	Right-handed alpha
Helix 45	AE9	C	113	129	Right-handed alpha
Helix 46	AF1	C	140	152	Right-handed alpha
Helix 47	AF2	C	188	192	Right-handed 310
Helix 48	AF3	C	202	211	Right-handed alpha
Helix 49	AF4	C	212	236	Right-handed alpha
Helix 50	AF5	C	252	267	Right-handed alpha
Helix 51	AF6	C	277	281	Right-handed alpha
Helix 52	AF7	L	69	73	Right-handed 310
Helix 53	AF8	L	89	94	Right-handed alpha
Helix 54	AF9	L	144	158	Right-handed alpha
Helix 55	AG1	L	176	199	Right-handed alpha
Helix 56	AG2	L	214	220	Right-handed alpha
Helix 57	AG3	L	233	235	Right-handed 310
Helix 58	AG4	L	236	245	Right-handed alpha
Helix 59	AG5	L	249	254	Right-handed 310
Helix 60	AG6	L	264	269	Right-handed alpha
Helix 61	AG7	L	271	278	Right-handed alpha
Helix 62	AG8	L	315	338	Right-handed alpha
Helix 63	AG9	L	352	369	Right-handed alpha
Helix 64	AH1	L	415	432	Right-handed alpha
Helix 65	AH2	L	444	455	Right-handed alpha
Helix 66	AH3	L	455	466	Right-handed alpha
Helix 67	AH4	N	148	154	Right-handed alpha
Helix 68	AH5	N	176	190	Right-handed alpha
Helix 69	AH6	N	214	221	Right-handed alpha
Helix 70	AH7	N	233	248	Right-handed alpha
Helix 71	AH8	N	251	256	Right-handed 310
Helix 72	AH9	N	261	266	Right-handed alpha
Helix 73	AI1	N	271	278	Right-handed alpha
Helix 74	AI2	N	314	338	Right-handed alpha
Helix 75	AI3	N	352	367	Right-handed alpha
Helix 76	AI4	N	406	410	Right-handed 310
Helix 77	AI5	N	415	432	Right-handed alpha
Helix 78	AI6	N	444	453	Right-handed alpha
Helix 79	AI7	N	455	466	Right-handed alpha
Helix 80	AI8	N	502	510	Right-handed alpha

There are 17 sheets in PDB entry 8B0J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	29	first strand
Strand 2	A	51	53	parallel
Strand 3	A	2	6	parallel
Strand 4	A	79	86	parallel
Strand 5	A	132	135	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	182	first strand
Strand 2	A	241	247	parallel
Strand 3	A	162	168	parallel
Strand 4	A	272	275	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	52	54	parallel
Strand 3	B	4	8	parallel
Strand 4	B	81	86	parallel
Strand 5	B	132	135	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	182	first strand
Strand 2	B	240	247	parallel
Strand 3	B	161	168	parallel
Strand 4	B	272	276	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	51	54	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	168	first strand
Strand 2	D	244	247	parallel
Strand 3	D	179	182	parallel
Strand 4	C	179	182	anti-parallel
Strand 5	C	240	247	parallel
Strand 6	C	161	168	parallel
Strand 7	C	272	276	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	30	first strand
Strand 2	C	52	54	parallel
Strand 3	C	4	6	parallel
Strand 4	C	82	86	parallel
Strand 5	C	132	135	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	23	27	first strand
Strand 2	L	15	20	anti-parallel
Strand 3	L	3	7	anti-parallel
Strand 4	L	228	231	parallel
Strand 5	L	256	258	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	41	42	first strand
Strand 2	L	102	106	anti-parallel
Strand 3	L	115	117	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	46	50	first strand
Strand 2	L	55	58	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	122	123	first strand
Strand 2	L	128	130	anti-parallel
Strand 3	L	165	166	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	282	283	first strand
Strand 2	L	291	295	anti-parallel
Strand 3	L	300	303	anti-parallel
Strand 4	L	343	345	parallel
Strand 5	L	386	389	anti-parallel
Strand 6	L	374	376	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	412	414	first strand
Strand 2	N	401	403	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	441	442	first strand
Strand 2	L	485	486	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	26	28	first strand
Strand 2	N	16	19	anti-parallel
Strand 3	N	3	5	anti-parallel
Strand 4	N	228	229	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	282	283	first strand
Strand 2	N	290	294	anti-parallel
Strand 3	N	301	305	anti-parallel
Strand 4	N	344	346	parallel
Strand 5	N	384	386	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	474	475	first strand
Strand 2	N	441	443	parallel
Strand 3	N	485	486	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8B0J

Analysis of interatomic Contacts of Structural Units in PDB entry:
8B0J