Analysis of interatomic Contacts of Structural Units in PDB entry:
8B0M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B0M entry

There is 1 chain in PDB entry 8B0M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLN 509
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8B0M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed alpha
Helix 2
AA2
A
9 23Right-handed alpha
Helix 3
AA3
A
24 28Right-handed 310
Helix 4
AA4
A
34 47Right-handed alpha
Helix 5
AA5
A
52 69Right-handed alpha
Helix 6
AA6
A
74 81Right-handed alpha
Helix 7
AA7
A
86 116Right-handed alpha
Helix 8
AA8
A
120 126Right-handed alpha
Helix 9
AA9
A
127 140Right-handed alpha
Helix 10
AB1
A
141 145Right-handed 310
Helix 11
AB2
A
150 155Right-handed alpha
Helix 12
AB3
A
156 157Right-handed 310
Helix 13
AB4
A
158 162Right-handed 310
Helix 14
AB5
A
163 168Right-handed alpha
Helix 15
AB6
A
168 189Right-handed alpha
Helix 16
AB7
A
192 204Right-handed alpha
Helix 17
AB8
A
205 211Right-handed 310
Helix 18
AB9
A
238 240Right-handed 310
Helix 19
AC1
A
241 257Right-handed alpha
Helix 20
AC2
A
277 292Right-handed alpha
Helix 21
AC3
A
345 349Right-handed 310
Helix 22
AC4
A
350 355Right-handed alpha
Helix 23
AC5
A
356 359Right-handed 310
Helix 24
AC6
A
386 391Right-handed 310
Helix 25
AC7
A
392 400Right-handed alpha
Helix 26
AC8
A
412 417Right-handed 310
Helix 27
AC9
A
420 437Right-handed alpha
Helix 28
AD1
A
481 487Right-handed alpha
Helix 29
AD2
A
488 508Right-handed alpha
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There are 4 sheets in PDB entry 8B0M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
477 478anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 273first strand
Strand 2
A
294 301parallel
Strand 3
A
313 320anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 273first strand
Strand 2
A
294 301parallel
Strand 3
A
262 264parallel
Strand 4
A
222 228parallel
Strand 5
A
468 474anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 377first strand
Strand 2
A
380 384anti-parallel
Strand 3
A
406 411parallel
Strand 4
A
440 444parallel
Strand 5
A
450 452anti-parallel
Strand 6
A
458 461anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il