Analysis of interatomic Contacts of Structural Units in PDB entry:
8B0O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B0O entry

There is 1 chain in PDB entry 8B0O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 3ARG 508
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8B0O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed alpha
Helix 2
AA2
A
9 25Right-handed alpha
Helix 3
AA3
A
26 28Right-handed 310
Helix 4
AA4
A
34 48Right-handed alpha
Helix 5
AA5
A
55 69Right-handed alpha
Helix 6
AA6
A
74 83Right-handed alpha
Helix 7
AA7
A
86 116Right-handed alpha
Helix 8
AA8
A
120 126Right-handed alpha
Helix 9
AA9
A
126 140Right-handed alpha
Helix 10
AB1
A
141 145Right-handed 310
Helix 11
AB2
A
160 162Right-handed 310
Helix 12
AB3
A
163 168Right-handed alpha
Helix 13
AB4
A
168 190Right-handed alpha
Helix 14
AB5
A
191 204Right-handed alpha
Helix 15
AB6
A
206 211Right-handed 310
Helix 16
AB7
A
218 221Right-handed 310
Helix 17
AB8
A
239 254Right-handed alpha
Helix 18
AB9
A
255 257Right-handed 310
Helix 19
AC1
A
277 292Right-handed alpha
Helix 20
AC2
A
386 391Right-handed 310
Helix 21
AC3
A
392 400Right-handed alpha
Helix 22
AC4
A
420 432Right-handed alpha
Helix 23
AC5
A
481 487Right-handed alpha
Helix 24
AC6
A
488 506Right-handed alpha
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There are 5 sheets in PDB entry 8B0O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
477 478anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 228first strand
Strand 2
A
468 474anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
294 304parallel
Strand 3
A
270 273parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
294 304parallel
Strand 3
A
310 318anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 376first strand
Strand 2
A
381 384anti-parallel
Strand 3
A
406 408parallel
Strand 4
A
440 442parallel
Strand 5
A
450 452anti-parallel
Strand 6
A
458 461anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il