Analysis of interatomic Contacts of Structural Units in PDB entry:
8B0U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8B0U entry

There are 4 chains in PDB entry 8B0U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	PHE 496
D	SER 195	GLY 270
B	GLY 1	PHE 496
C	SER 195	GLY 270

There are 53 helices in PDB entry 8B0U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	9	Right-handed alpha
Helix 2	AA2	A	11	21	Right-handed alpha
Helix 3	AA3	A	25	27	Right-handed 310
Helix 4	AA4	A	28	36	Right-handed alpha
Helix 5	AA5	A	42	59	Right-handed alpha
Helix 6	AA6	A	64	71	Right-handed alpha
Helix 7	AA7	A	75	85	Right-handed alpha
Helix 8	AA8	A	99	103	Right-handed 310
Helix 9	AA9	A	125	137	Right-handed alpha
Helix 10	AB1	A	153	163	Right-handed alpha
Helix 11	AB2	A	167	171	Right-handed alpha
Helix 12	AB3	A	189	200	Right-handed alpha
Helix 13	AB4	A	212	221	Right-handed alpha
Helix 14	AB5	A	234	236	Right-handed 310
Helix 15	AB6	A	237	251	Right-handed alpha
Helix 16	AB7	A	252	256	Right-handed 310
Helix 17	AB8	A	259	267	Right-handed alpha
Helix 18	AB9	A	270	273	Right-handed 310
Helix 19	AC1	A	285	306	Right-handed alpha
Helix 20	AC2	A	312	314	Right-handed 310
Helix 21	AC3	A	324	336	Right-handed alpha
Helix 22	AC4	A	394	405	Right-handed alpha
Helix 23	AC5	A	427	441	Right-handed alpha
Helix 24	AC6	A	453	465	Right-handed alpha
Helix 25	AC7	A	489	493	Right-handed 310
Helix 26	AC8	D	221	224	Right-handed 310
Helix 27	AC9	D	256	263	Right-handed alpha
Helix 28	AD1	B	2	9	Right-handed alpha
Helix 29	AD2	B	11	21	Right-handed alpha
Helix 30	AD3	B	25	27	Right-handed 310
Helix 31	AD4	B	28	36	Right-handed alpha
Helix 32	AD5	B	42	59	Right-handed alpha
Helix 33	AD6	B	64	71	Right-handed alpha
Helix 34	AD7	B	75	85	Right-handed alpha
Helix 35	AD8	B	99	103	Right-handed 310
Helix 36	AD9	B	125	137	Right-handed alpha
Helix 37	AE1	B	153	163	Right-handed alpha
Helix 38	AE2	B	189	200	Right-handed alpha
Helix 39	AE3	B	212	221	Right-handed alpha
Helix 40	AE4	B	234	236	Right-handed 310
Helix 41	AE5	B	237	251	Right-handed alpha
Helix 42	AE6	B	252	256	Right-handed 310
Helix 43	AE7	B	259	268	Right-handed alpha
Helix 44	AE8	B	270	273	Right-handed 310
Helix 45	AE9	B	285	306	Right-handed alpha
Helix 46	AF1	B	312	314	Right-handed 310
Helix 47	AF2	B	324	336	Right-handed alpha
Helix 48	AF3	B	394	405	Right-handed alpha
Helix 49	AF4	B	427	441	Right-handed alpha
Helix 50	AF5	B	453	465	Right-handed alpha
Helix 51	AF6	B	489	493	Right-handed 310
Helix 52	AF7	C	221	224	Right-handed 310
Helix 53	AF8	C	256	263	Right-handed alpha

There are 14 sheets in PDB entry 8B0U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	94	first strand
Strand 2	A	104	113	anti-parallel
Strand 3	A	139	144	anti-parallel
Strand 4	A	118	119	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	174	first strand
Strand 2	A	203	205	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	178	first strand
Strand 2	A	184	185	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	277	first strand
Strand 2	A	225	232	parallel
Strand 3	A	316	321	parallel
Strand 4	A	341	345	parallel
Strand 5	A	351	356	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	378	first strand
Strand 2	A	410	415	anti-parallel
Strand 3	A	382	388	parallel
Strand 4	A	445	451	parallel
Strand 5	A	470	475	parallel
Strand 6	A	480	486	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	200	202	first strand
Strand 2	D	206	210	anti-parallel
Strand 3	D	214	219	anti-parallel
Strand 4	D	246	250	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	242	first strand
Strand 2	D	226	232	anti-parallel
Strand 3	D	264	268	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	94	first strand
Strand 2	B	104	113	anti-parallel
Strand 3	B	139	144	anti-parallel
Strand 4	B	118	119	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	174	first strand
Strand 2	B	203	205	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	178	first strand
Strand 2	B	184	185	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	277	first strand
Strand 2	B	225	232	parallel
Strand 3	B	316	321	parallel
Strand 4	B	341	345	parallel
Strand 5	B	351	356	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	378	first strand
Strand 2	B	410	415	anti-parallel
Strand 3	B	382	388	parallel
Strand 4	B	445	451	parallel
Strand 5	B	470	475	parallel
Strand 6	B	480	482	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	202	first strand
Strand 2	C	206	210	anti-parallel
Strand 3	C	214	219	anti-parallel
Strand 4	C	246	250	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	242	first strand
Strand 2	C	226	232	anti-parallel
Strand 3	C	264	266	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8B0U

Analysis of interatomic Contacts of Structural Units in PDB entry:
8B0U