Analysis of interatomic Contacts of Structural Units in PDB entry:
8B0V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B0V entry

There are 2 chains in PDB entry 8B0V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 81ARG 204
B
 GLY 81ARG 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 8B0V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
96 98Right-handed 310
Helix 2
AA2
A
107 111Right-handed 310
Helix 3
AA3
A
126 130Right-handed 310
Helix 4
AA4
B
96 98Right-handed 310
Helix 5
AA5
B
107 111Right-handed 310
Helix 6
AA6
B
126 130Right-handed 310
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There are 2 sheets in PDB entry 8B0V. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 104first strand
Strand 2
A
82 85anti-parallel
Strand 3
A
117 120parallel
Strand 4
A
136 140anti-parallel
Strand 5
A
192 202anti-parallel
Strand 6
A
150 155anti-parallel
Strand 7
A
158 167anti-parallel
Strand 8
A
170 174anti-parallel
Strand 9
A
183 186anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 104first strand
Strand 2
B
82 85anti-parallel
Strand 3
B
117 120parallel
Strand 4
B
136 141anti-parallel
Strand 5
B
192 202anti-parallel
Strand 6
B
150 155anti-parallel
Strand 7
B
158 167anti-parallel
Strand 8
B
170 174anti-parallel
Strand 9
B
183 186anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il