Analysis of interatomic Contacts of Structural Units in PDB entry:
8B19


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B19 entry

There are 3 chains in PDB entry 8B19 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 11ALA 484
B
 VAL 2HIS 128
C
 ALA 1ALA 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8B19. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 44Right-handed alpha
Helix 2
AA2
A
48 66Right-handed alpha
Helix 3
AA3
A
66 77Right-handed alpha
Helix 4
AA4
A
79 101Right-handed alpha
Helix 5
AA5
A
102 103Right-handed 310
Helix 6
AA6
A
104 106Right-handed 310
Helix 7
AA7
A
107 123Right-handed alpha
Helix 8
AA8
A
123 132Right-handed alpha
Helix 9
AA9
A
140 171Right-handed alpha
Helix 10
AB1
A
171 193Right-handed alpha
Helix 11
AB2
A
194 198Right-handed 310
Helix 12
AB3
A
202 207Right-handed 310
Helix 13
AB4
A
210 234Right-handed alpha
Helix 14
AB5
A
234 256Right-handed alpha
Helix 15
AB6
A
267 286Right-handed alpha
Helix 16
AB7
A
290 300Right-handed alpha
Helix 17
AB8
A
310 315Right-handed 310
Helix 18
AB9
A
316 332Right-handed alpha
Helix 19
AC1
A
344 370Right-handed alpha
Helix 20
AC2
A
378 408Right-handed alpha
Helix 21
AC3
A
414 436Right-handed alpha
Helix 22
AC4
A
437 439Right-handed 310
Helix 23
AC5
A
446 484Right-handed alpha
Helix 24
AC6
B
28 30Right-handed 310
Helix 25
AC7
B
61 64Right-handed 310
Helix 26
AC8
B
86 90Right-handed 310
Helix 27
AC9
B
106 110Right-handed 310
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There are 4 sheets in PDB entry 8B19. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 304first strand
Strand 2
A
307 308anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
18 24anti-parallel
Strand 3
B
77 82anti-parallel
Strand 4
B
67 72anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
117 122parallel
Strand 3
B
91 99anti-parallel
Strand 4
B
32 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
57 59anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
117 122parallel
Strand 3
B
91 99anti-parallel
Strand 4
B
112 113anti-parallel
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