Analysis of interatomic Contacts of Structural Units in PDB entry:
8B1P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B1P entry

There is 1 chain in PDB entry 8B1P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 44ILE 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 8B1P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 65Right-handed alpha
Helix 2
AA2
A
107 117Right-handed alpha
Helix 3
AA3
A
147 153Right-handed alpha
Helix 4
AA4
A
159 163Right-handed alpha
Helix 5
AA5
A
236 245Right-handed alpha
Helix 6
AA6
A
254 256Right-handed 310
Helix 7
AA7
A
264 273Right-handed alpha
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There are 4 sheets in PDB entry 8B1P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
173 185parallel
Strand 3
A
71 83anti-parallel
Strand 4
A
86 101anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 125first strand
Strand 2
A
132 138anti-parallel
Strand 3
A
154 158anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
206 208anti-parallel
Strand 3
A
304 306anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 253first strand
Strand 2
A
258 262anti-parallel
Strand 3
A
284 288anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il