Analysis of interatomic Contacts of Structural Units in PDB entry:
8B22


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B22 entry

There are 2 chains in PDB entry 8B22 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 2PHE 726
B
 ALA 4ASN 661
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 8B22. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 28Right-handed alpha
Helix 2
AA2
A
32 71Right-handed alpha
Helix 3
AA3
A
73 112Right-handed alpha
Helix 4
AA4
A
114 147Right-handed alpha
Helix 5
AA5
A
153 158Right-handed alpha
Helix 6
AA6
A
170 211Right-handed alpha
Helix 7
AA7
A
222 237Right-handed alpha
Helix 8
AA8
A
238 266Right-handed alpha
Helix 9
AA9
A
279 311Right-handed alpha
Helix 10
AB1
A
316 344Right-handed alpha
Helix 11
AB2
A
349 354Right-handed alpha
Helix 12
AB3
A
357 359Right-handed 310
Helix 13
AB4
A
360 383Right-handed alpha
Helix 14
AB5
A
388 398Right-handed alpha
Helix 15
AB6
A
401 417Right-handed alpha
Helix 16
AB7
A
417 448Right-handed alpha
Helix 17
AB8
A
450 475Right-handed alpha
Helix 18
AB9
A
477 521Right-handed alpha
Helix 19
AC1
A
523 527Right-handed 310
Helix 20
AC2
A
530 535Right-handed alpha
Helix 21
AC3
A
541 583Right-handed alpha
Helix 22
AC4
A
595 611Right-handed alpha
Helix 23
AC5
A
611 630Right-handed alpha
Helix 24
AC6
A
630 668Right-handed alpha
Helix 25
AC7
A
678 697Right-handed alpha
Helix 26
AC8
A
697 721Right-handed alpha
Helix 27
AC9
B
5 27Right-handed alpha
Helix 28
AD1
B
32 71Right-handed alpha
Helix 29
AD2
B
73 113Right-handed alpha
Helix 30
AD3
B
114 147Right-handed alpha
Helix 31
AD4
B
153 158Right-handed alpha
Helix 32
AD5
B
170 209Right-handed alpha
Helix 33
AD6
B
222 237Right-handed alpha
Helix 34
AD7
B
238 266Right-handed alpha
Helix 35
AD8
B
279 311Right-handed alpha
Helix 36
AD9
B
316 344Right-handed alpha
Helix 37
AE1
B
349 354Right-handed alpha
Helix 38
AE2
B
357 359Right-handed 310
Helix 39
AE3
B
360 383Right-handed alpha
Helix 40
AE4
B
388 398Right-handed alpha
Helix 41
AE5
B
401 417Right-handed alpha
Helix 42
AE6
B
417 448Right-handed alpha
Helix 43
AE7
B
450 474Right-handed alpha
Helix 44
AE8
B
477 521Right-handed alpha
Helix 45
AE9
B
523 527Right-handed 310
Helix 46
AF1
B
530 535Right-handed alpha
Helix 47
AF2
B
541 583Right-handed alpha
Helix 48
AF3
B
595 611Right-handed alpha
Helix 49
AF4
B
611 630Right-handed alpha
Helix 50
AF5
B
630 668Right-handed alpha
Helix 51
AF6
B
678 697Right-handed alpha
Helix 52
AF7
B
697 721Right-handed alpha
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There are 4 sheets in PDB entry 8B22. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
168 169anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 269first strand
Strand 2
A
274 276anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 162first strand
Strand 2
B
168 169anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 268first strand
Strand 2
B
275 276anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il