Analysis of interatomic Contacts of Structural Units in PDB entry:
8B27


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B27 entry

There are 2 chains in PDB entry 8B27 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 12SER 363
B
 HIS 10GLU 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8B27. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 60Right-handed alpha
Helix 2
AA2
A
163 167Right-handed 310
Helix 3
AA3
A
168 180Right-handed alpha
Helix 4
AA4
A
195 209Right-handed alpha
Helix 5
AA5
A
218 220Right-handed 310
Helix 6
AA6
A
221 227Right-handed alpha
Helix 7
AA7
A
239 246Right-handed alpha
Helix 8
AA8
A
263 268Right-handed alpha
Helix 9
AA9
A
289 295Right-handed alpha
Helix 10
AB1
A
307 321Right-handed alpha
Helix 11
AB2
A
331 333Right-handed 310
Helix 12
AB3
A
334 344Right-handed alpha
Helix 13
AB4
A
355 359Right-handed alpha
Helix 14
AB5
B
52 60Right-handed alpha
Helix 15
AB6
B
163 167Right-handed 310
Helix 16
AB7
B
168 180Right-handed alpha
Helix 17
AB8
B
195 208Right-handed alpha
Helix 18
AB9
B
218 220Right-handed 310
Helix 19
AC1
B
221 227Right-handed alpha
Helix 20
AC2
B
239 246Right-handed alpha
Helix 21
AC3
B
263 268Right-handed alpha
Helix 22
AC4
B
289 297Right-handed alpha
Helix 23
AC5
B
307 321Right-handed alpha
Helix 24
AC6
B
331 333Right-handed 310
Helix 25
AC7
B
334 344Right-handed alpha
Helix 26
AC8
B
355 359Right-handed alpha
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There are 8 sheets in PDB entry 8B27. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 19first strand
Strand 2
A
27 33anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 147first strand
Strand 2
A
41 51anti-parallel
Strand 3
A
75 83anti-parallel
Strand 4
A
95 98anti-parallel
Strand 5
A
151 153anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 147first strand
Strand 2
A
41 51anti-parallel
Strand 3
A
351 354anti-parallel
Strand 4
A
328 330parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 236first strand
Strand 2
A
211 216parallel
Strand 3
A
188 192parallel
Strand 4
A
250 255parallel
Strand 5
A
270 278parallel
Strand 6
A
299 302parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 19first strand
Strand 2
B
27 34anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 147first strand
Strand 2
B
41 50anti-parallel
Strand 3
B
75 83anti-parallel
Strand 4
B
95 98anti-parallel
Strand 5
B
151 153anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 147first strand
Strand 2
B
41 50anti-parallel
Strand 3
B
350 354anti-parallel
Strand 4
B
327 330parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 236first strand
Strand 2
B
211 216parallel
Strand 3
B
188 192parallel
Strand 4
B
250 255parallel
Strand 5
B
270 278parallel
Strand 6
B
299 301parallel
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