Analysis of interatomic Contacts of Structural Units in PDB entry:
8B28


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B28 entry

There is 1 chain in PDB entry 8B28 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8B28. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 10Right-handed alpha
Helix 2
AA2
A
12 27Right-handed alpha
Helix 3
AA3
A
52 56Right-handed 310
Helix 4
AA4
A
72 76Right-handed 310
Helix 5
AA5
A
88 101Right-handed alpha
Helix 6
AA6
A
102 113Right-handed alpha
Helix 7
AA7
A
123 140Right-handed alpha
Helix 8
AA8
A
159 169Right-handed alpha
Helix 9
AA9
A
171 173Right-handed 310
Helix 10
AB1
A
184 189Right-handed alpha
Helix 11
AB2
A
196 205Right-handed alpha
Helix 12
AB3
A
206 211Right-handed 310
Helix 13
AB4
A
220 241Right-handed alpha
Helix 14
AB5
A
244 252Right-handed alpha
Helix 15
AB6
A
280 291Right-handed alpha
Helix 16
AB7
A
301 311Right-handed alpha
Helix 17
AB8
A
312 323Right-handed alpha
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There are 2 sheets in PDB entry 8B28. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 39first strand
Strand 2
A
42 47anti-parallel
Strand 3
A
116 122parallel
Strand 4
A
148 152parallel
Strand 5
A
175 180parallel
Strand 6
A
265 271parallel
Strand 7
A
274 278anti-parallel
Strand 8
A
325 328parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
85 87anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il