Analysis of interatomic Contacts of Structural Units in PDB entry:
8B2D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8B2D entry

There are 2 chains in PDB entry 8B2D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 448
B	ALA 2	SER 445

There are 36 helices in PDB entry 8B2D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	27	Right-handed alpha
Helix 2	AA2	A	44	48	Right-handed 310
Helix 3	AA3	A	75	79	Right-handed 310
Helix 4	AA4	A	85	91	Right-handed alpha
Helix 5	AA5	A	99	115	Right-handed alpha
Helix 6	AA6	A	116	118	Right-handed 310
Helix 7	AA7	A	175	179	Right-handed 310
Helix 8	AA8	A	187	189	Right-handed 310
Helix 9	AA9	A	191	196	Right-handed 310
Helix 10	AB1	A	206	219	Right-handed alpha
Helix 11	AB2	A	300	302	Right-handed 310
Helix 12	AB3	A	321	337	Right-handed alpha
Helix 13	AB4	A	344	362	Right-handed alpha
Helix 14	AB5	A	364	382	Right-handed alpha
Helix 15	AB6	A	389	407	Right-handed alpha
Helix 16	AB7	A	410	414	Right-handed 310
Helix 17	AB8	A	431	435	Right-handed 310
Helix 18	AB9	A	439	445	Right-handed alpha
Helix 19	AC1	B	11	27	Right-handed alpha
Helix 20	AC2	B	44	48	Right-handed 310
Helix 21	AC3	B	75	79	Right-handed 310
Helix 22	AC4	B	85	91	Right-handed alpha
Helix 23	AC5	B	99	115	Right-handed alpha
Helix 24	AC6	B	116	118	Right-handed 310
Helix 25	AC7	B	175	179	Right-handed 310
Helix 26	AC8	B	187	189	Right-handed 310
Helix 27	AC9	B	191	196	Right-handed 310
Helix 28	AD1	B	206	219	Right-handed alpha
Helix 29	AD2	B	300	302	Right-handed 310
Helix 30	AD3	B	321	337	Right-handed alpha
Helix 31	AD4	B	344	362	Right-handed alpha
Helix 32	AD5	B	364	381	Right-handed alpha
Helix 33	AD6	B	389	407	Right-handed alpha
Helix 34	AD7	B	410	414	Right-handed 310
Helix 35	AD8	B	431	435	Right-handed 310
Helix 36	AD9	B	439	445	Right-handed alpha

There are 12 sheets in PDB entry 8B2D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	33	37	parallel
Strand 3	A	4	8	parallel
Strand 4	A	157	160	parallel
Strand 5	A	310	312	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	132	first strand
Strand 2	A	137	144	anti-parallel
Strand 3	A	149	155	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	A	274	275	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	185	first strand
Strand 2	A	267	270	parallel
Strand 3	A	199	203	parallel
Strand 4	A	223	228	parallel
Strand 5	A	241	245	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	250	first strand
Strand 2	A	254	257	anti-parallel
Strand 3	A	262	264	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	299	first strand
Strand 2	A	303	304	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	121	first strand
Strand 2	B	33	37	parallel
Strand 3	B	4	8	parallel
Strand 4	B	157	160	parallel
Strand 5	B	310	312	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	132	first strand
Strand 2	B	137	144	anti-parallel
Strand 3	B	149	155	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	168	first strand
Strand 2	B	274	275	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	185	first strand
Strand 2	B	267	270	parallel
Strand 3	B	199	203	parallel
Strand 4	B	223	228	parallel
Strand 5	B	241	245	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	250	first strand
Strand 2	B	254	257	anti-parallel
Strand 3	B	262	264	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	299	first strand
Strand 2	B	303	304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8B2D

Analysis of interatomic Contacts of Structural Units in PDB entry:
8B2D