Analysis of interatomic Contacts of Structural Units in PDB entry:
8B2P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B2P entry

There are 2 chains in PDB entry 8B2P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 48LYS 469
B
 GLN 49ASN 470
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8B2P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 63Right-handed 310
Helix 2
AA2
A
64 68Right-handed 310
Helix 3
AA3
A
80 92Right-handed alpha
Helix 4
AA4
A
110 120Right-handed alpha
Helix 5
AA5
A
143 147Right-handed 310
Helix 6
AA6
A
150 161Right-handed alpha
Helix 7
AA7
A
164 185Right-handed alpha
Helix 8
AA8
A
194 198Right-handed alpha
Helix 9
AA9
A
198 212Right-handed alpha
Helix 10
AB1
A
214 217Right-handed 310
Helix 11
AB2
A
218 230Right-handed alpha
Helix 12
AB3
A
231 236Right-handed alpha
Helix 13
AB4
A
242 269Right-handed alpha
Helix 14
AB5
A
276 284Right-handed alpha
Helix 15
AB6
A
285 288Right-handed 310
Helix 16
AB7
A
289 292Right-handed 310
Helix 17
AB8
A
293 326Right-handed alpha
Helix 18
AB9
A
326 336Right-handed alpha
Helix 19
AC1
A
339 352Right-handed alpha
Helix 20
AC2
A
381 386Right-handed alpha
Helix 21
AC3
A
404 408Right-handed 310
Helix 22
AC4
A
420 438Right-handed alpha
Helix 23
AC5
B
59 63Right-handed 310
Helix 24
AC6
B
64 68Right-handed 310
Helix 25
AC7
B
80 92Right-handed alpha
Helix 26
AC8
B
110 120Right-handed alpha
Helix 27
AC9
B
143 147Right-handed 310
Helix 28
AD1
B
150 161Right-handed alpha
Helix 29
AD2
B
164 185Right-handed alpha
Helix 30
AD3
B
194 198Right-handed alpha
Helix 31
AD4
B
198 212Right-handed alpha
Helix 32
AD5
B
214 217Right-handed 310
Helix 33
AD6
B
218 230Right-handed alpha
Helix 34
AD7
B
231 236Right-handed alpha
Helix 35
AD8
B
242 269Right-handed alpha
Helix 36
AD9
B
276 284Right-handed alpha
Helix 37
AE1
B
285 288Right-handed 310
Helix 38
AE2
B
289 292Right-handed 310
Helix 39
AE3
B
293 326Right-handed alpha
Helix 40
AE4
B
326 336Right-handed alpha
Helix 41
AE5
B
339 352Right-handed alpha
Helix 42
AE6
B
381 386Right-handed alpha
Helix 43
AE7
B
404 408Right-handed 310
Helix 44
AE8
B
420 438Right-handed alpha
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There are 6 sheets in PDB entry 8B2P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
105 108anti-parallel
Strand 3
A
377 380parallel
Strand 4
A
357 361anti-parallel
Strand 5
A
124 125anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
459 468anti-parallel
Strand 3
A
439 450anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 367first strand
Strand 2
A
370 372anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 97first strand
Strand 2
B
105 108anti-parallel
Strand 3
B
377 380parallel
Strand 4
B
357 361anti-parallel
Strand 5
B
124 125anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 193first strand
Strand 2
B
459 468anti-parallel
Strand 3
B
439 450anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
365 367first strand
Strand 2
B
370 372anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il