Analysis of interatomic Contacts of Structural Units in PDB entry:
8B2Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B2Q entry

There are 2 chains in PDB entry 8B2Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 35PHE 200
I
 GLN 25ASN 118
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 8B2Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 76Right-handed alpha
Helix 2
AA2
A
87 91Right-handed 310
Helix 3
AA3
A
125 129Right-handed 310
Helix 4
AA4
A
149 162Right-handed alpha
Helix 5
AA5
A
185 197Right-handed alpha
Helix 6
AA6
I
75 79Right-handed 310
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There are 3 sheets in PDB entry 8B2Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 84first strand
Strand 2
A
46 51parallel
Strand 3
A
93 98parallel
Strand 4
A
131 135parallel
Strand 5
A
116 118anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
147 148parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
33 47first strand
Strand 2
I
52 58anti-parallel
Strand 3
I
66 71anti-parallel
Strand 4
I
104 117parallel
Strand 5
I
84 93anti-parallel
Strand 6
I
33 47anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il