Analysis of interatomic Contacts of Structural Units in PDB entry:
8B2S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B2S entry

There are 2 chains in PDB entry 8B2S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 1CYS 245
B
 TYR 1CYS 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8B2S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 60Right-handed 310
Helix 2
AA2
A
87 99Right-handed alpha
Helix 3
AA3
A
135 158Right-handed alpha
Helix 4
AA4
A
166 180Right-handed alpha
Helix 5
AA5
A
180 186Right-handed alpha
Helix 6
AA6
A
187 195Right-handed alpha
Helix 7
AA7
A
198 207Right-handed alpha
Helix 8
AA8
A
208 210Right-handed 310
Helix 9
AA9
A
218 233Right-handed alpha
Helix 10
AB1
B
58 60Right-handed 310
Helix 11
AB2
B
87 99Right-handed alpha
Helix 12
AB3
B
135 158Right-handed alpha
Helix 13
AB4
B
166 180Right-handed alpha
Helix 14
AB5
B
180 186Right-handed alpha
Helix 15
AB6
B
187 195Right-handed alpha
Helix 16
AB7
B
198 207Right-handed alpha
Helix 17
AB8
B
208 210Right-handed 310
Helix 18
AB9
B
218 233Right-handed alpha
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There are 10 sheets in PDB entry 8B2S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
19 23anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 40first strand
Strand 2
A
43 48anti-parallel
Strand 3
A
54 56anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
118 119anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
239 241anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
216 217anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 10first strand
Strand 2
B
19 23anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 40first strand
Strand 2
B
43 48anti-parallel
Strand 3
B
54 56anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 114first strand
Strand 2
B
118 119anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 165first strand
Strand 2
B
239 241anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 213first strand
Strand 2
B
216 217anti-parallel
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