Analysis of interatomic Contacts of Structural Units in PDB entry:
8B38

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8B38 entry

There are 3 chains in PDB entry 8B38 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 625	LEU 894
B	ALA 34	LEU 275
C	CYS 332	PHE 609

There are 17 helices in PDB entry 8B38. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	625	630	Right-handed alpha
Helix 2	AA2	A	631	633	Right-handed 310
Helix 3	AA3	A	651	655	Right-handed 310
Helix 4	AA4	A	665	670	Right-handed alpha
Helix 5	AA5	A	731	736	Right-handed alpha
Helix 6	AA6	A	798	803	Right-handed alpha
Helix 7	AA7	A	841	846	Right-handed alpha
Helix 8	AA8	B	73	77	Right-handed 310
Helix 9	AA9	B	86	90	Right-handed 310
Helix 10	AB1	B	112	119	Right-handed alpha
Helix 11	AB2	B	120	127	Right-handed alpha
Helix 12	AB3	B	168	172	Right-handed 310
Helix 13	AB4	B	173	182	Right-handed alpha
Helix 14	AB5	B	218	222	Right-handed 310
Helix 15	AB6	C	388	392	Right-handed 310
Helix 16	AB7	C	441	447	Right-handed alpha
Helix 17	AB8	C	596	598	Right-handed 310

There are 14 sheets in PDB entry 8B38. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	674	679	first strand
Strand 2	A	866	874	anti-parallel
Strand 3	A	746	754	anti-parallel
Strand 4	A	821	826	anti-parallel
Strand 5	C	361	362	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	785	787	first strand
Strand 2	A	696	702	anti-parallel
Strand 3	A	849	855	anti-parallel
Strand 4	A	766	772	anti-parallel
Strand 5	A	812	815	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	742	743	first strand
Strand 2	A	879	880	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	790	791	first strand
Strand 2	A	794	795	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	890	891	first strand
Strand 2	C	600	601	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	44	first strand
Strand 2	B	65	66	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	51	first strand
Strand 2	B	56	57	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	102	first strand
Strand 2	B	245	262	anti-parallel
Strand 3	B	130	144	anti-parallel
Strand 4	B	198	201	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	102	first strand
Strand 2	B	245	262	anti-parallel
Strand 3	B	130	144	anti-parallel
Strand 4	B	210	211	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	111	first strand
Strand 2	B	224	231	anti-parallel
Strand 3	B	152	158	anti-parallel
Strand 4	B	186	190	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	403	first strand
Strand 2	C	577	584	anti-parallel
Strand 3	C	457	464	anti-parallel
Strand 4	C	505	509	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	413	418	first strand
Strand 2	C	556	566	anti-parallel
Strand 3	C	470	478	anti-parallel
Strand 4	C	493	499	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	425	427	first strand
Strand 2	C	437	439	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	519	first strand
Strand 2	C	452	454	anti-parallel
Strand 3	C	589	590	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8B38

Analysis of interatomic Contacts of Structural Units in PDB entry:
8B38