Analysis of interatomic Contacts of Structural Units in PDB entry:
8B3E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B3E entry

There is 1 chain in PDB entry 8B3E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 34VAL 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 8B3E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 43Right-handed alpha
Helix 2
AA2
A
45 88Right-handed alpha
Helix 3
AA3
A
90 143Right-handed alpha
Helix 4
AA4
A
185 190Right-handed alpha
Helix 5
AA5
A
191 198Right-handed 310
Helix 6
AA6
A
210 216Right-handed alpha
Helix 7
AA7
A
228 232Right-handed 310
Helix 8
AA8
A
296 314Right-handed alpha
Helix 9
AA9
A
321 325Right-handed 310
Helix 10
AB1
A
326 331Right-handed 310
Helix 11
AB2
A
336 347Right-handed alpha
Helix 12
AB3
A
358 370Right-handed alpha
Helix 13
AB4
A
375 381Right-handed alpha
Helix 14
AB5
A
383 388Right-handed alpha
Helix 15
AB6
A
403 407Right-handed alpha
Helix 16
AB7
A
411 425Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8B3E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
176 177anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 155first strand
Strand 2
A
168 170anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 208first strand
Strand 2
A
274 277anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 226first strand
Strand 2
A
259 267anti-parallel
Strand 3
A
242 243anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
253 254anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 392first strand
Strand 2
A
399 402anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il