Analysis of interatomic Contacts of Structural Units in PDB entry:
8B3J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8B3J entry

There are 3 chains in PDB entry 8B3J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 638	LEU 894
B	ASN 88	LEU 275
C	CYS 332	PHE 609

There are 10 helices in PDB entry 8B3J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	665	670	Right-handed alpha
Helix 2	AA2	A	683	687	Right-handed 310
Helix 3	AA3	A	731	736	Right-handed alpha
Helix 4	AA4	A	796	802	Right-handed alpha
Helix 5	AA5	A	841	846	Right-handed alpha
Helix 6	AA6	B	112	119	Right-handed alpha
Helix 7	AA7	B	173	182	Right-handed alpha
Helix 8	AA8	C	375	379	Right-handed 310
Helix 9	AA9	C	388	392	Right-handed 310
Helix 10	AB1	C	441	447	Right-handed alpha

There are 11 sheets in PDB entry 8B3J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	640	641	first strand
Strand 2	C	504	509	parallel
Strand 3	C	457	463	anti-parallel
Strand 4	C	577	582	anti-parallel
Strand 5	C	397	403	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	674	678	first strand
Strand 2	A	867	874	anti-parallel
Strand 3	A	746	753	anti-parallel
Strand 4	A	821	826	anti-parallel
Strand 5	C	361	362	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	783	788	first strand
Strand 2	A	695	702	anti-parallel
Strand 3	A	849	856	anti-parallel
Strand 4	A	766	772	anti-parallel
Strand 5	A	811	815	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	742	743	first strand
Strand 2	A	879	880	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	890	891	first strand
Strand 2	C	600	601	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	101	first strand
Strand 2	B	246	260	anti-parallel
Strand 3	B	132	144	anti-parallel
Strand 4	B	197	200	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	101	first strand
Strand 2	B	246	260	anti-parallel
Strand 3	B	132	144	anti-parallel
Strand 4	B	210	211	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	111	first strand
Strand 2	B	224	235	anti-parallel
Strand 3	B	149	158	anti-parallel
Strand 4	B	186	190	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	494	498	first strand
Strand 2	C	470	478	anti-parallel
Strand 3	C	556	566	anti-parallel
Strand 4	C	413	418	anti-parallel
Strand 5	C	532	533	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	427	428	first strand
Strand 2	C	436	437	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	519	first strand
Strand 2	C	452	454	anti-parallel
Strand 3	C	589	590	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8B3J

Analysis of interatomic Contacts of Structural Units in PDB entry:
8B3J