Analysis of interatomic Contacts of Structural Units in PDB entry:
8B40

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8B40 entry

There are 2 chains in PDB entry 8B40 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 16	ALA 804
B	ALA 16	TYR 646

There are210 helices in PDB entry 8B40. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	49	Right-handed alpha
Helix 2	AA2	A	104	119	Right-handed alpha
Helix 3	AA3	A	121	148	Right-handed alpha
Helix 4	AA4	A	148	168	Right-handed alpha
Helix 5	AA5	A	168	176	Right-handed alpha
Helix 6	AA6	A	237	253	Right-handed alpha
Helix 7	AA7	A	256	287	Right-handed alpha
Helix 8	AA8	A	311	342	Right-handed alpha
Helix 9	AA9	A	353	359	Right-handed alpha
Helix 10	AB1	A	367	381	Right-handed alpha
Helix 11	AB2	A	381	389	Right-handed alpha
Helix 12	AB3	A	390	392	Right-handed 310
Helix 13	AB4	A	393	409	Right-handed alpha
Helix 14	AB5	A	410	418	Right-handed alpha
Helix 15	AB6	A	437	443	Right-handed 310
Helix 16	AB7	A	460	466	Right-handed 310
Helix 17	AB8	A	482	493	Right-handed alpha
Helix 18	AB9	A	507	513	Right-handed 310
Helix 19	AC1	A	557	563	Right-handed 310
Helix 20	AC2	A	582	588	Right-handed 310
Helix 21	AC3	A	607	611	Right-handed 310
Helix 22	AC4	A	629	634	Right-handed alpha
Helix 23	AC5	A	653	659	Right-handed 310
Helix 24	AC6	A	677	682	Right-handed 310
Helix 25	AC7	A	699	705	Right-handed 310
Helix 26	AC8	A	722	728	Right-handed 310
Helix 27	AC9	A	745	751	Right-handed 310
Helix 28	AD1	A	768	774	Right-handed 310
Helix 29	AD2	A	785	791	Right-handed alpha
Helix 30	AD3	A	793	802	Right-handed alpha
Helix 31	AD4	B	22	49	Right-handed alpha
Helix 32	AD5	B	104	119	Right-handed alpha
Helix 33	AD6	B	121	148	Right-handed alpha
Helix 34	AD7	B	148	168	Right-handed alpha
Helix 35	AD8	B	168	176	Right-handed alpha
Helix 36	AD9	B	237	253	Right-handed alpha
Helix 37	AE1	B	256	287	Right-handed alpha
Helix 38	AE2	B	311	342	Right-handed alpha
Helix 39	AE3	B	353	359	Right-handed alpha
Helix 40	AE4	B	367	381	Right-handed alpha
Helix 41	AE5	B	381	389	Right-handed alpha
Helix 42	AE6	B	390	392	Right-handed 310
Helix 43	AE7	B	393	409	Right-handed alpha
Helix 44	AE8	B	410	418	Right-handed alpha
Helix 45	AE9	B	437	443	Right-handed 310
Helix 46	AF1	B	460	466	Right-handed 310
Helix 47	AF2	B	482	493	Right-handed alpha
Helix 48	AF3	B	507	513	Right-handed 310
Helix 49	AF4	B	557	563	Right-handed 310
Helix 50	AF5	B	582	588	Right-handed 310
Helix 51	AF6	B	607	611	Right-handed 310
Helix 52	AF7	B	629	634	Right-handed alpha
Helix 53	AF8	B	653	659	Right-handed 310
Helix 54	AF9	B	677	682	Right-handed 310
Helix 55	AG1	B	699	705	Right-handed 310
Helix 56	AG2	B	722	728	Right-handed 310
Helix 57	AG3	B	745	751	Right-handed 310
Helix 58	AG4	B	768	774	Right-handed 310
Helix 59	AG5	B	785	791	Right-handed alpha
Helix 60	AG6	B	793	802	Right-handed alpha
Helix 61	AG7	C	22	49	Right-handed alpha
Helix 62	AG8	C	104	119	Right-handed alpha
Helix 63	AG9	C	121	148	Right-handed alpha
Helix 64	AH1	C	148	168	Right-handed alpha
Helix 65	AH2	C	168	176	Right-handed alpha
Helix 66	AH3	C	237	253	Right-handed alpha
Helix 67	AH4	C	256	287	Right-handed alpha
Helix 68	AH5	C	311	342	Right-handed alpha
Helix 69	AH6	C	353	359	Right-handed alpha
Helix 70	AH7	C	367	381	Right-handed alpha
Helix 71	AH8	C	381	389	Right-handed alpha
Helix 72	AH9	C	390	392	Right-handed 310
Helix 73	AI1	C	393	409	Right-handed alpha
Helix 74	AI2	C	410	418	Right-handed alpha
Helix 75	AI3	C	437	443	Right-handed 310
Helix 76	AI4	C	460	466	Right-handed 310
Helix 77	AI5	C	482	493	Right-handed alpha
Helix 78	AI6	C	507	513	Right-handed 310
Helix 79	AI7	C	557	563	Right-handed 310
Helix 80	AI8	C	583	588	Right-handed 310
Helix 81	AI9	C	607	611	Right-handed 310
Helix 82	AJ1	C	629	634	Right-handed alpha
Helix 83	AJ2	C	653	659	Right-handed 310
Helix 84	AJ3	C	676	682	Right-handed 310
Helix 85	AJ4	C	699	705	Right-handed 310
Helix 86	AJ5	C	722	728	Right-handed 310
Helix 87	AJ6	C	745	751	Right-handed 310
Helix 88	AJ7	C	768	774	Right-handed 310
Helix 89	AJ8	C	785	791	Right-handed alpha
Helix 90	AJ9	C	793	802	Right-handed alpha
Helix 91	AK1	D	22	49	Right-handed alpha
Helix 92	AK2	D	104	119	Right-handed alpha
Helix 93	AK3	D	121	148	Right-handed alpha
Helix 94	AK4	D	148	168	Right-handed alpha
Helix 95	AK5	D	168	176	Right-handed alpha
Helix 96	AK6	D	237	253	Right-handed alpha
Helix 97	AK7	D	256	287	Right-handed alpha
Helix 98	AK8	D	312	342	Right-handed alpha
Helix 99	AK9	D	353	359	Right-handed alpha
Helix 100	AL1	D	367	381	Right-handed alpha
Helix 101	AL2	D	381	389	Right-handed alpha
Helix 102	AL3	D	390	392	Right-handed 310
Helix 103	AL4	D	393	409	Right-handed alpha
Helix 104	AL5	D	410	418	Right-handed alpha
Helix 105	AL6	D	437	443	Right-handed 310
Helix 106	AL7	D	460	466	Right-handed 310
Helix 107	AL8	D	482	493	Right-handed alpha
Helix 108	AL9	D	507	513	Right-handed 310
Helix 109	AM1	D	557	563	Right-handed 310
Helix 110	AM2	D	583	588	Right-handed 310
Helix 111	AM3	D	607	611	Right-handed 310
Helix 112	AM4	D	629	634	Right-handed alpha
Helix 113	AM5	D	653	659	Right-handed 310
Helix 114	AM6	D	676	682	Right-handed 310
Helix 115	AM7	D	699	705	Right-handed 310
Helix 116	AM8	D	722	728	Right-handed 310
Helix 117	AM9	D	745	751	Right-handed 310
Helix 118	AN1	D	768	774	Right-handed 310
Helix 119	AN2	D	785	791	Right-handed alpha
Helix 120	AN3	D	793	802	Right-handed alpha
Helix 121	AN4	E	22	49	Right-handed alpha
Helix 122	AN5	E	104	119	Right-handed alpha
Helix 123	AN6	E	121	148	Right-handed alpha
Helix 124	AN7	E	148	168	Right-handed alpha
Helix 125	AN8	E	168	176	Right-handed alpha
Helix 126	AN9	E	237	253	Right-handed alpha
Helix 127	AO1	E	256	285	Right-handed alpha
Helix 128	AO2	E	311	342	Right-handed alpha
Helix 129	AO3	E	353	359	Right-handed alpha
Helix 130	AO4	E	367	381	Right-handed alpha
Helix 131	AO5	E	381	389	Right-handed alpha
Helix 132	AO6	E	390	392	Right-handed 310
Helix 133	AO7	E	393	409	Right-handed alpha
Helix 134	AO8	E	410	418	Right-handed alpha
Helix 135	AO9	E	437	443	Right-handed 310
Helix 136	AP1	E	460	466	Right-handed 310
Helix 137	AP2	E	482	493	Right-handed alpha
Helix 138	AP3	E	507	513	Right-handed 310
Helix 139	AP4	E	557	563	Right-handed 310
Helix 140	AP5	E	583	588	Right-handed 310
Helix 141	AP6	E	607	611	Right-handed 310
Helix 142	AP7	E	629	634	Right-handed alpha
Helix 143	AP8	E	653	659	Right-handed 310
Helix 144	AP9	E	676	682	Right-handed 310
Helix 145	AQ1	E	699	705	Right-handed 310
Helix 146	AQ2	E	722	728	Right-handed 310
Helix 147	AQ3	E	745	751	Right-handed 310
Helix 148	AQ4	E	768	774	Right-handed 310
Helix 149	AQ5	E	785	791	Right-handed alpha
Helix 150	AQ6	E	793	802	Right-handed alpha
Helix 151	AQ7	F	22	50	Right-handed alpha
Helix 152	AQ8	F	104	119	Right-handed alpha
Helix 153	AQ9	F	121	148	Right-handed alpha
Helix 154	AR1	F	148	168	Right-handed alpha
Helix 155	AR2	F	168	176	Right-handed alpha
Helix 156	AR3	F	237	253	Right-handed alpha
Helix 157	AR4	F	256	285	Right-handed alpha
Helix 158	AR5	F	311	342	Right-handed alpha
Helix 159	AR6	F	353	359	Right-handed alpha
Helix 160	AR7	F	367	381	Right-handed alpha
Helix 161	AR8	F	381	389	Right-handed alpha
Helix 162	AR9	F	390	392	Right-handed 310
Helix 163	AS1	F	393	409	Right-handed alpha
Helix 164	AS2	F	410	418	Right-handed alpha
Helix 165	AS3	F	437	443	Right-handed 310
Helix 166	AS4	F	460	466	Right-handed 310
Helix 167	AS5	F	482	493	Right-handed alpha
Helix 168	AS6	F	507	513	Right-handed 310
Helix 169	AS7	F	557	563	Right-handed 310
Helix 170	AS8	F	583	588	Right-handed 310
Helix 171	AS9	F	607	611	Right-handed 310
Helix 172	AT1	F	629	634	Right-handed alpha
Helix 173	AT2	F	653	659	Right-handed 310
Helix 174	AT3	F	676	682	Right-handed 310
Helix 175	AT4	F	699	705	Right-handed 310
Helix 176	AT5	F	722	728	Right-handed 310
Helix 177	AT6	F	745	751	Right-handed 310
Helix 178	AT7	F	768	774	Right-handed 310
Helix 179	AT8	F	785	791	Right-handed alpha
Helix 180	AT9	F	793	802	Right-handed alpha
Helix 181	AU1	G	22	49	Right-handed alpha
Helix 182	AU2	G	104	119	Right-handed alpha
Helix 183	AU3	G	121	148	Right-handed alpha
Helix 184	AU4	G	148	168	Right-handed alpha
Helix 185	AU5	G	168	176	Right-handed alpha
Helix 186	AU6	G	237	253	Right-handed alpha
Helix 187	AU7	G	256	287	Right-handed alpha
Helix 188	AU8	G	311	342	Right-handed alpha
Helix 189	AU9	G	353	359	Right-handed alpha
Helix 190	AV1	G	367	381	Right-handed alpha
Helix 191	AV2	G	381	389	Right-handed alpha
Helix 192	AV3	G	390	392	Right-handed 310
Helix 193	AV4	G	393	409	Right-handed alpha
Helix 194	AV5	G	410	418	Right-handed alpha
Helix 195	AV6	G	437	443	Right-handed 310
Helix 196	AV7	G	460	466	Right-handed 310
Helix 197	AV8	G	482	493	Right-handed alpha
Helix 198	AV9	G	507	513	Right-handed 310
Helix 199	AW1	G	557	563	Right-handed 310
Helix 200	AW2	G	583	588	Right-handed 310
Helix 201	AW3	G	607	611	Right-handed 310
Helix 202	AW4	G	629	634	Right-handed alpha
Helix 203	AW5	G	653	659	Right-handed 310
Helix 204	AW6	G	676	682	Right-handed 310
Helix 205	AW7	G	699	705	Right-handed 310
Helix 206	AW8	G	722	728	Right-handed 310
Helix 207	AW9	G	745	751	Right-handed 310
Helix 208	AX1	G	768	774	Right-handed 310
Helix 209	AX2	G	785	791	Right-handed alpha
Helix 210	AX3	G	793	802	Right-handed alpha

There are 21 sheets in PDB entry 8B40. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	56	first strand
Strand 2	A	305	310	anti-parallel
Strand 3	A	290	294	anti-parallel

Back to list of sheets
Back to top of page

There are 17 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	420	first strand
Strand 2	A	426	430	anti-parallel
Strand 3	A	448	452	parallel
Strand 4	A	471	475	parallel
Strand 5	A	495	499	parallel
Strand 6	A	518	522	parallel
Strand 7	A	546	550	parallel
Strand 8	A	569	573	parallel
Strand 9	A	593	597	parallel
Strand 10	A	616	618	parallel
Strand 11	A	641	643	parallel
Strand 12	A	664	666	parallel
Strand 13	A	687	689	parallel
Strand 14	A	710	712	parallel
Strand 15	A	733	735	parallel
Strand 16	A	756	758	parallel
Strand 17	A	782	783	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	459	first strand
Strand 2	A	479	481	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	56	first strand
Strand 2	B	305	310	anti-parallel
Strand 3	B	290	294	anti-parallel

Back to list of sheets
Back to top of page

There are 17 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	420	first strand
Strand 2	B	426	430	anti-parallel
Strand 3	B	448	452	parallel
Strand 4	B	473	475	parallel
Strand 5	B	495	499	parallel
Strand 6	B	518	522	parallel
Strand 7	B	546	550	parallel
Strand 8	B	569	573	parallel
Strand 9	B	593	597	parallel
Strand 10	B	616	618	parallel
Strand 11	B	641	643	parallel
Strand 12	B	664	666	parallel
Strand 13	B	687	689	parallel
Strand 14	B	710	712	parallel
Strand 15	B	733	735	parallel
Strand 16	B	756	758	parallel
Strand 17	B	782	783	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	459	first strand
Strand 2	B	479	481	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	56	first strand
Strand 2	C	305	310	anti-parallel
Strand 3	C	290	294	anti-parallel

Back to list of sheets
Back to top of page

There are 17 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	419	420	first strand
Strand 2	C	426	430	anti-parallel
Strand 3	C	448	452	parallel
Strand 4	C	471	475	parallel
Strand 5	C	495	499	parallel
Strand 6	C	518	522	parallel
Strand 7	C	546	550	parallel
Strand 8	C	569	573	parallel
Strand 9	C	593	597	parallel
Strand 10	C	616	618	parallel
Strand 11	C	641	643	parallel
Strand 12	C	664	666	parallel
Strand 13	C	687	689	parallel
Strand 14	C	710	712	parallel
Strand 15	C	733	735	parallel
Strand 16	C	756	758	parallel
Strand 17	C	782	783	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	457	459	first strand
Strand 2	C	479	481	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	56	first strand
Strand 2	D	305	310	anti-parallel
Strand 3	D	290	294	anti-parallel

Back to list of sheets
Back to top of page

There are 17 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	419	420	first strand
Strand 2	D	426	430	anti-parallel
Strand 3	D	448	452	parallel
Strand 4	D	471	475	parallel
Strand 5	D	495	499	parallel
Strand 6	D	518	522	parallel
Strand 7	D	546	550	parallel
Strand 8	D	569	573	parallel
Strand 9	D	593	597	parallel
Strand 10	D	616	618	parallel
Strand 11	D	641	643	parallel
Strand 12	D	664	666	parallel
Strand 13	D	687	689	parallel
Strand 14	D	710	712	parallel
Strand 15	D	733	735	parallel
Strand 16	D	756	758	parallel
Strand 17	D	782	783	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	457	459	first strand
Strand 2	D	479	481	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	56	first strand
Strand 2	E	305	310	anti-parallel
Strand 3	E	290	294	anti-parallel

Back to list of sheets
Back to top of page

There are 17 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	419	420	first strand
Strand 2	E	426	430	anti-parallel
Strand 3	E	448	452	parallel
Strand 4	E	471	475	parallel
Strand 5	E	495	499	parallel
Strand 6	E	518	522	parallel
Strand 7	E	546	550	parallel
Strand 8	E	569	573	parallel
Strand 9	E	593	597	parallel
Strand 10	E	616	618	parallel
Strand 11	E	641	643	parallel
Strand 12	E	664	666	parallel
Strand 13	E	687	689	parallel
Strand 14	E	710	712	parallel
Strand 15	E	733	735	parallel
Strand 16	E	756	758	parallel
Strand 17	E	782	783	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	457	459	first strand
Strand 2	E	479	481	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	56	first strand
Strand 2	F	305	310	anti-parallel
Strand 3	F	290	294	anti-parallel

Back to list of sheets
Back to top of page

There are 17 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	419	420	first strand
Strand 2	F	426	430	anti-parallel
Strand 3	F	448	452	parallel
Strand 4	F	471	475	parallel
Strand 5	F	495	499	parallel
Strand 6	F	518	522	parallel
Strand 7	F	546	550	parallel
Strand 8	F	569	573	parallel
Strand 9	F	593	597	parallel
Strand 10	F	616	618	parallel
Strand 11	F	641	643	parallel
Strand 12	F	664	666	parallel
Strand 13	F	687	689	parallel
Strand 14	F	710	712	parallel
Strand 15	F	733	735	parallel
Strand 16	F	756	758	parallel
Strand 17	F	782	783	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	457	459	first strand
Strand 2	F	479	481	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	52	56	first strand
Strand 2	G	305	310	anti-parallel
Strand 3	G	290	294	anti-parallel

Back to list of sheets
Back to top of page

There are 17 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	419	420	first strand
Strand 2	G	426	430	anti-parallel
Strand 3	G	448	452	parallel
Strand 4	G	471	475	parallel
Strand 5	G	495	499	parallel
Strand 6	G	518	522	parallel
Strand 7	G	546	550	parallel
Strand 8	G	569	573	parallel
Strand 9	G	593	597	parallel
Strand 10	G	616	618	parallel
Strand 11	G	641	643	parallel
Strand 12	G	664	666	parallel
Strand 13	G	687	689	parallel
Strand 14	G	710	712	parallel
Strand 15	G	733	735	parallel
Strand 16	G	756	758	parallel
Strand 17	G	782	783	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	457	459	first strand
Strand 2	G	479	481	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8B40

Analysis of interatomic Contacts of Structural Units in PDB entry:
8B40