Analysis of interatomic Contacts of Structural Units in PDB entry:
8B41

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8B41 entry

There are 10 chains in PDB entry 8B41 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 15	GLU 808
B	PRO 15	GLU 808
C	PRO 15	GLU 808
D	PRO 15	GLU 808
E	ALA 16	GLU 394
F	ALA 16	TYR 343
G	GLN 1	SER 114
H	GLN 1	SER 114
I	GLN 1	SER 114
J	GLN 1	SER 114

There are164 helices in PDB entry 8B41. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	21	Right-handed 310
Helix 2	AA2	A	22	50	Right-handed alpha
Helix 3	AA3	A	102	117	Right-handed alpha
Helix 4	AA4	A	119	124	Right-handed alpha
Helix 5	AA5	A	124	141	Right-handed alpha
Helix 6	AA6	A	141	146	Right-handed alpha
Helix 7	AA7	A	146	165	Right-handed alpha
Helix 8	AA8	A	166	176	Right-handed alpha
Helix 9	AA9	A	233	255	Right-handed alpha
Helix 10	AB1	A	259	286	Right-handed alpha
Helix 11	AB2	A	287	289	Right-handed 310
Helix 12	AB3	A	314	344	Right-handed alpha
Helix 13	AB4	A	354	361	Right-handed alpha
Helix 14	AB5	A	372	383	Right-handed alpha
Helix 15	AB6	A	383	395	Right-handed alpha
Helix 16	AB7	A	396	411	Right-handed alpha
Helix 17	AB8	A	412	419	Right-handed alpha
Helix 18	AB9	A	439	445	Right-handed 310
Helix 19	AC1	A	462	468	Right-handed 310
Helix 20	AC2	A	484	492	Right-handed alpha
Helix 21	AC3	A	504	508	Right-handed 310
Helix 22	AC4	A	535	543	Right-handed 310
Helix 23	AC5	A	559	566	Right-handed alpha
Helix 24	AC6	A	607	613	Right-handed 310
Helix 25	AC7	A	629	637	Right-handed 310
Helix 26	AC8	A	655	661	Right-handed 310
Helix 27	AC9	A	678	684	Right-handed 310
Helix 28	AD1	A	701	707	Right-handed 310
Helix 29	AD2	A	724	730	Right-handed 310
Helix 30	AD3	A	747	753	Right-handed 310
Helix 31	AD4	A	770	776	Right-handed 310
Helix 32	AD5	A	787	792	Right-handed alpha
Helix 33	AD6	A	795	808	Right-handed alpha
Helix 34	AD7	B	16	20	Right-handed 310
Helix 35	AD8	B	22	49	Right-handed alpha
Helix 36	AD9	B	102	117	Right-handed alpha
Helix 37	AE1	B	119	124	Right-handed alpha
Helix 38	AE2	B	124	141	Right-handed alpha
Helix 39	AE3	B	141	146	Right-handed alpha
Helix 40	AE4	B	146	165	Right-handed alpha
Helix 41	AE5	B	166	175	Right-handed alpha
Helix 42	AE6	B	218	222	Right-handed 310
Helix 43	AE7	B	233	255	Right-handed alpha
Helix 44	AE8	B	259	286	Right-handed alpha
Helix 45	AE9	B	287	289	Right-handed 310
Helix 46	AF1	B	299	304	Right-handed alpha
Helix 47	AF2	B	314	346	Right-handed alpha
Helix 48	AF3	B	355	360	Right-handed alpha
Helix 49	AF4	B	372	383	Right-handed alpha
Helix 50	AF5	B	383	392	Right-handed alpha
Helix 51	AF6	B	393	395	Right-handed 310
Helix 52	AF7	B	396	411	Right-handed alpha
Helix 53	AF8	B	412	419	Right-handed alpha
Helix 54	AF9	B	441	445	Right-handed 310
Helix 55	AG1	B	462	468	Right-handed 310
Helix 56	AG2	B	484	493	Right-handed alpha
Helix 57	AG3	B	504	508	Right-handed 310
Helix 58	AG4	B	511	515	Right-handed 310
Helix 59	AG5	B	535	543	Right-handed 310
Helix 60	AG6	B	559	566	Right-handed alpha
Helix 61	AG7	B	586	590	Right-handed 310
Helix 62	AG8	B	607	613	Right-handed 310
Helix 63	AG9	B	629	638	Right-handed 310
Helix 64	AH1	B	655	661	Right-handed 310
Helix 65	AH2	B	678	684	Right-handed 310
Helix 66	AH3	B	701	707	Right-handed 310
Helix 67	AH4	B	724	730	Right-handed 310
Helix 68	AH5	B	747	753	Right-handed 310
Helix 69	AH6	B	770	776	Right-handed 310
Helix 70	AH7	B	787	792	Right-handed alpha
Helix 71	AH8	B	795	807	Right-handed alpha
Helix 72	AH9	C	16	20	Right-handed 310
Helix 73	AI1	C	22	50	Right-handed alpha
Helix 74	AI2	C	102	117	Right-handed alpha
Helix 75	AI3	C	119	124	Right-handed alpha
Helix 76	AI4	C	124	141	Right-handed alpha
Helix 77	AI5	C	141	146	Right-handed alpha
Helix 78	AI6	C	146	165	Right-handed alpha
Helix 79	AI7	C	166	176	Right-handed alpha
Helix 80	AI8	C	233	256	Right-handed alpha
Helix 81	AI9	C	259	286	Right-handed alpha
Helix 82	AJ1	C	287	289	Right-handed 310
Helix 83	AJ2	C	299	304	Right-handed alpha
Helix 84	AJ3	C	314	346	Right-handed alpha
Helix 85	AJ4	C	353	361	Right-handed alpha
Helix 86	AJ5	C	372	383	Right-handed alpha
Helix 87	AJ6	C	384	395	Right-handed alpha
Helix 88	AJ7	C	396	411	Right-handed alpha
Helix 89	AJ8	C	412	420	Right-handed alpha
Helix 90	AJ9	C	441	445	Right-handed 310
Helix 91	AK1	C	462	468	Right-handed 310
Helix 92	AK2	C	484	492	Right-handed alpha
Helix 93	AK3	C	510	515	Right-handed 310
Helix 94	AK4	C	537	543	Right-handed 310
Helix 95	AK5	C	559	566	Right-handed alpha
Helix 96	AK6	C	607	613	Right-handed 310
Helix 97	AK7	C	629	638	Right-handed 310
Helix 98	AK8	C	655	661	Right-handed 310
Helix 99	AK9	C	679	684	Right-handed 310
Helix 100	AL1	C	701	707	Right-handed 310
Helix 101	AL2	C	724	729	Right-handed 310
Helix 102	AL3	C	747	753	Right-handed 310
Helix 103	AL4	C	770	776	Right-handed 310
Helix 104	AL5	C	787	792	Right-handed alpha
Helix 105	AL6	C	795	808	Right-handed alpha
Helix 106	AL7	D	16	20	Right-handed 310
Helix 107	AL8	D	22	50	Right-handed alpha
Helix 108	AL9	D	102	117	Right-handed alpha
Helix 109	AM1	D	119	141	Right-handed alpha
Helix 110	AM2	D	141	146	Right-handed alpha
Helix 111	AM3	D	146	165	Right-handed alpha
Helix 112	AM4	D	166	176	Right-handed alpha
Helix 113	AM5	D	217	221	Right-handed alpha
Helix 114	AM6	D	233	255	Right-handed alpha
Helix 115	AM7	D	259	286	Right-handed alpha
Helix 116	AM8	D	287	289	Right-handed 310
Helix 117	AM9	D	314	347	Right-handed alpha
Helix 118	AN1	D	353	361	Right-handed alpha
Helix 119	AN2	D	372	383	Right-handed alpha
Helix 120	AN3	D	384	392	Right-handed alpha
Helix 121	AN4	D	395	409	Right-handed alpha
Helix 122	AN5	D	412	420	Right-handed alpha
Helix 123	AN6	D	439	445	Right-handed 310
Helix 124	AN7	D	462	468	Right-handed 310
Helix 125	AN8	D	484	495	Right-handed alpha
Helix 126	AN9	D	504	508	Right-handed 310
Helix 127	AO1	D	511	515	Right-handed 310
Helix 128	AO2	D	537	543	Right-handed 310
Helix 129	AO3	D	559	566	Right-handed alpha
Helix 130	AO4	D	607	613	Right-handed 310
Helix 131	AO5	D	629	638	Right-handed 310
Helix 132	AO6	D	655	661	Right-handed 310
Helix 133	AO7	D	678	684	Right-handed 310
Helix 134	AO8	D	701	707	Right-handed 310
Helix 135	AO9	D	724	730	Right-handed 310
Helix 136	AP1	D	747	753	Right-handed 310
Helix 137	AP2	D	770	776	Right-handed 310
Helix 138	AP3	D	787	792	Right-handed alpha
Helix 139	AP4	D	795	808	Right-handed alpha
Helix 140	AP5	E	22	50	Right-handed alpha
Helix 141	AP6	E	104	119	Right-handed alpha
Helix 142	AP7	E	121	148	Right-handed alpha
Helix 143	AP8	E	148	168	Right-handed alpha
Helix 144	AP9	E	245	252	Right-handed alpha
Helix 145	AQ1	E	256	284	Right-handed alpha
Helix 146	AQ2	E	285	287	Right-handed 310
Helix 147	AQ3	E	312	342	Right-handed alpha
Helix 148	AQ4	E	367	381	Right-handed alpha
Helix 149	AQ5	E	383	393	Right-handed alpha
Helix 150	AQ6	F	22	50	Right-handed alpha
Helix 151	AQ7	F	104	119	Right-handed alpha
Helix 152	AQ8	F	121	126	Right-handed alpha
Helix 153	AQ9	F	126	148	Right-handed alpha
Helix 154	AR1	F	148	156	Right-handed alpha
Helix 155	AR2	F	256	285	Right-handed alpha
Helix 156	AR3	F	312	343	Right-handed alpha
Helix 157	AR4	G	28	32	Right-handed 310
Helix 158	AR5	G	87	91	Right-handed 310
Helix 159	AR6	H	28	32	Right-handed 310
Helix 160	AR7	H	62	65	Right-handed 310
Helix 161	AR8	H	87	91	Right-handed 310
Helix 162	AR9	I	87	91	Right-handed 310
Helix 163	AS1	J	28	32	Right-handed 310
Helix 164	AS2	J	87	91	Right-handed 310

There are 29 sheets in PDB entry 8B41. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	308	311	anti-parallel
Strand 3	A	292	295	anti-parallel

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There are 17 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	422	first strand
Strand 2	A	428	433	anti-parallel
Strand 3	A	450	454	parallel
Strand 4	A	473	477	parallel
Strand 5	A	497	501	parallel
Strand 6	A	520	524	parallel
Strand 7	A	548	552	parallel
Strand 8	A	571	575	parallel
Strand 9	A	595	599	parallel
Strand 10	A	618	620	parallel
Strand 11	A	643	645	parallel
Strand 12	A	666	668	parallel
Strand 13	A	689	691	parallel
Strand 14	A	712	714	parallel
Strand 15	A	735	737	parallel
Strand 16	A	758	760	parallel
Strand 17	A	784	785	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	461	first strand
Strand 2	A	481	483	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	308	311	anti-parallel
Strand 3	B	292	295	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	64	65	anti-parallel

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There are 13 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	422	first strand
Strand 2	B	428	433	anti-parallel
Strand 3	B	450	454	parallel
Strand 4	B	473	477	parallel
Strand 5	B	497	501	parallel
Strand 6	B	520	524	parallel
Strand 7	B	548	552	parallel
Strand 8	B	571	575	parallel
Strand 9	B	595	599	parallel
Strand 10	B	618	620	parallel
Strand 11	B	643	645	parallel
Strand 12	B	666	668	parallel
Strand 13	B	689	691	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	460	461	first strand
Strand 2	B	482	483	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	735	737	first strand
Strand 2	B	758	760	parallel
Strand 3	B	784	785	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	308	311	anti-parallel
Strand 3	C	292	295	anti-parallel

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There are 17 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	421	422	first strand
Strand 2	C	428	433	anti-parallel
Strand 3	C	450	454	parallel
Strand 4	C	473	477	parallel
Strand 5	C	497	501	parallel
Strand 6	C	520	524	parallel
Strand 7	C	548	552	parallel
Strand 8	C	571	575	parallel
Strand 9	C	595	599	parallel
Strand 10	C	618	620	parallel
Strand 11	C	643	645	parallel
Strand 12	C	666	668	parallel
Strand 13	C	689	691	parallel
Strand 14	C	712	714	parallel
Strand 15	C	735	737	parallel
Strand 16	C	759	760	parallel
Strand 17	C	784	785	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	305	311	anti-parallel
Strand 3	D	292	299	anti-parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	421	422	first strand
Strand 2	D	428	433	anti-parallel
Strand 3	D	450	454	parallel
Strand 4	D	473	477	parallel
Strand 5	D	497	501	parallel
Strand 6	D	520	524	parallel
Strand 7	D	548	552	parallel
Strand 8	D	571	575	parallel
Strand 9	D	595	599	parallel
Strand 10	D	618	620	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	460	461	first strand
Strand 2	D	482	483	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	643	645	first strand
Strand 2	D	666	668	parallel
Strand 3	D	689	691	parallel
Strand 4	D	712	714	parallel
Strand 5	D	735	737	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	759	760	first strand
Strand 2	D	784	785	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	56	first strand
Strand 2	E	305	310	anti-parallel
Strand 3	E	290	294	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	56	first strand
Strand 2	F	305	310	anti-parallel
Strand 3	F	290	294	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	18	24	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	13	first strand
Strand 2	G	110	114	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	46	51	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	13	first strand
Strand 2	G	110	114	parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	103	105	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	17	23	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	13	first strand
Strand 2	H	109	114	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	13	first strand
Strand 2	H	109	114	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	103	104	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	18	24	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	109	114	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	46	51	anti-parallel
Strand 6	I	58	60	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	109	114	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	103	105	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	17	24	anti-parallel
Strand 3	J	78	84	anti-parallel
Strand 4	J	68	73	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	109	113	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	34	39	anti-parallel
Strand 5	J	45	51	anti-parallel
Strand 6	J	58	60	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	109	113	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	103	105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8B41

Analysis of interatomic Contacts of Structural Units in PDB entry:
8B41