Analysis of interatomic Contacts of Structural Units in PDB entry:
8B47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8B47 entry

There are 2 chains in PDB entry 8B47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 263
B
 MET 1ASP 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8B47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 25Right-handed alpha
Helix 2
AA2
A
44 55Right-handed alpha
Helix 3
AA3
A
56 62Right-handed 310
Helix 4
AA4
A
79 81Right-handed 310
Helix 5
AA5
A
82 92Right-handed alpha
Helix 6
AA6
A
157 161Right-handed 310
Helix 7
AA7
A
162 168Right-handed alpha
Helix 8
AA8
A
252 262Right-handed alpha
Helix 9
AA9
B
10 26Right-handed alpha
Helix 10
AB1
B
44 55Right-handed alpha
Helix 11
AB2
B
58 62Right-handed 310
Helix 12
AB3
B
79 81Right-handed 310
Helix 13
AB4
B
82 92Right-handed alpha
Helix 14
AB5
B
157 161Right-handed 310
Helix 15
AB6
B
162 167Right-handed alpha
Helix 16
AB7
B
252 262Right-handed alpha
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There are 7 sheets in PDB entry 8B47. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
2 7parallel
Strand 3
A
38 43parallel
Strand 4
A
63 68parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 120first strand
Strand 2
A
96 108anti-parallel
Strand 3
A
233 247anti-parallel
Strand 4
A
207 211anti-parallel
Strand 5
A
133 139anti-parallel
Strand 6
A
142 149anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 228first strand
Strand 2
A
217 221anti-parallel
Strand 3
A
123 128anti-parallel
Strand 4
A
151 155anti-parallel
Strand 5
A
178 184anti-parallel
Strand 6
A
199 202anti-parallel
Strand 7
B
171 172parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 172first strand
Strand 2
B
199 201parallel
Strand 3
B
179 184anti-parallel
Strand 4
B
151 155anti-parallel
Strand 5
B
123 128anti-parallel
Strand 6
B
217 221anti-parallel
Strand 7
B
224 228anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
2 7parallel
Strand 3
B
38 43parallel
Strand 4
B
63 68parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 100first strand
Strand 2
B
243 247anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 120first strand
Strand 2
B
103 109anti-parallel
Strand 3
B
231 238anti-parallel
Strand 4
B
207 211anti-parallel
Strand 5
B
133 139anti-parallel
Strand 6
B
142 149anti-parallel
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